9YFA | pdb_00009yfa

Solution NMR structure of the C-terminal DNA-binding domain of BqsR from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 9YFA

This is version 1.1 of the entry. See complete history

Literature

The response regulator BqsR/CarR controls Fe 2+ acquisition in Pseudomonas aeruginosa.

Paredes, A.Hull, M.Singh, H.Greene, D.Tajudeen, A.O.Kubo, A.Patamawenu, S.Kramer, R.Brown, J.B.Chacon, K.N.Patrauchan, M.A.Smith, A.T.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-76130-1
  • Primary Citation Related Structures: 
    9YFA

  • PubMed Abstract: 

    Pseudomonas aeruginosa is a ubiquitous, Gram-negative bacterium that forms biofilms and is responsible for antibiotic-resistant hospital-acquired infections in humans. The P. aeruginosa BqsRS two-component system regulates biofilm formation and dispersal by sensing extracytoplasmic Fe 2+ , but the mechanistic details of this process are poorly understood. In this work, we report the crystal and solution structures of the PaBqsR response regulator receiver domain, comprising a (βα) 5 response regulator assembly, and the DNA-binding domain, comprising a helix-turn-helix motif. Consistent with its cognate stimulus being Fe 2+ , we show that PaBqsR binds directly to the promoter region of the feo operon that encodes the bacterial Fe 2+ transport system FeoABC. Corroborating these in vitro results, transcriptional studies show that PaBqsR is a global regulator controlling many important genes in PAO1, including the feo operon. Intriguingly, promoter-based assays reveal that PaBqsR is a dynamic regulator that responds to bioavailable Fe 2+ , likely through the ability of PaBqsR to bind Fe 2+ directly via a His-rich motif, independent of the PaBqsS membrane His kinase. To our knowledge, this mode of regulation has not been reported previously among OmpR-like response regulators but represents an important level of control over Fe 2+ acquisition in P. aeruginosa that could be an attractive therapeutic target to treat hospital-acquired infections.


  • Organizational Affiliation
    • Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, USA.

Macromolecule Content 

  • Total Structure Weight: 11.44 kDa 
  • Atom Count: 801 
  • Modeled Residue Count: 101 
  • Deposited Residue Count: 101 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Response regulator protein CarR101Pseudomonas aeruginosaMutation(s): 0 
Gene Names: carRPA2657
UniProt
Find proteins for Q9I0I1 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q9I0I1 
Go to UniProtKB:  Q9I0I1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9I0I1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM133497
Howard Hughes Medical Institute (HHMI)United StatesGT15765

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-02
    Type: Initial release
  • Version 1.1: 2026-09-09
    Changes: Database references