9YFA | pdb_00009yfa

Solution NMR structure of the C-terminal DNA-binding domain of BqsR from Pseudomonas aeruginosa

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D CBCA(CO)NH	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-13C; U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
2	3D HBHA(CO)NH	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
3	3D HNCO	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-13C; U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
4	3D HNCA	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-13C; U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
5	2D HSQC	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
6	3D HNCACB	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-13C; U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
8	3D HBHACO	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
9	3D NOESY	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 800
10	3D NOESY	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.6 mM [U-13C] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
11	3D HCCH-TOCSY	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.6 mM [U-13C] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600
12	HMQC	50 mM sodium phosphate, 5 mM DTT, 5 mM sodium chloride, 0.5 mM [U-15N] BqsR	90% H2O/10% D2O	5 mM	5.5	1 atm	298	Bruker DMX 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	600
2	Bruker	DMX	800

NMR Refinement
Method	Details	Software
na		CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	160
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
5	processing	NMRFx		Johnson, One Moon Scientific
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	CcpNmr Analysis		Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, and Vuister GW
4	peak picking	NMRFx		Johnson, One Moon Scientific
6	refinement	CYANA		Guntert, Mumenthaler and Wuthrich