9YA8 | pdb_00009ya8

The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 6 and 7

  • Classification: MOTOR PROTEIN
  • Organism(s): Sus scrofa
  • Expression System: Sus scrofa
  • Mutation(s): No 

  • Deposited: 2025-09-15 Released: 2026-07-22 
  • Deposition Author(s): Galkin, V.E., Risi, C.M.
  • Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.32 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 9YA8

This is version 1.1 of the entry. See complete history

Literature

The structure of the native cardiac crossbridge in the rigor state.

Risi, C.M.Nguyen, T.Belknap, B.White, H.D.Pinto, J.R.Chase, P.B.Galkin, V.E.

(2026) Sci Adv 12: eaeg1209-eaeg1209

  • DOI: https://doi.org/10.1126/sciadv.aeg1209
  • Primary Citation Related Structures: 
    9YA8, 9YAQ, 9YJP, 9YK9, 9YKN

  • PubMed Abstract: 

    Cardiac contraction is driven by double-headed myosin cycling on cardiac thin filaments, where troponin-tropomyosin regulates myosin access to actin. Prior high-resolution structural studies used a single-headed myosin bound to bare actin, thereby limiting insight into coordination between myosin heads and the influence of troponin-tropomyosin on actomyosin interactions. Here, we report a high-resolution structure of the native cardiac rigor cross-bridge formed by heavy meromyosin bound to the thin filament. We show that direct communication between the two bound heads, uneven interactions between the heads and tropomyosin, and spatial constraints imposed by troponin govern myosin placement along the thin filament. Additionally, the two heads display non-equivalent motor-light chain interactions, yielding distinct lever-arm conformations indicative of asymmetric intramolecular strain. Together, these findings provide a structural framework for how the two myosin heads coordinate and how the components of the thin filament are integrated into force generation by active cross-bridges.


  • Organizational Affiliation
    • Department of Biomedical and Translational Sciences, Macon & Joan Brock Virginia Health Sciences at Old Dominion University, Norfolk, VA 23507, USA.

Macromolecule Content 

  • Total Structure Weight: 825.93 kDa 
  • Atom Count: 30,831 
  • Modeled Residue Count: 3,858 
  • Deposited Residue Count: 7,191 
  • Unique protein chains: 5

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin, alpha cardiac muscle 1
A, B, C, D
377Sus scrofaMutation(s): 0 
Gene Names: ACTC1
UniProt
Find proteins for B6VNT8 (Sus scrofa)
Explore B6VNT8 
Go to UniProtKB:  B6VNT8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB6VNT8
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Tropomyosin alpha-1 chain
E, F, G, H
284Sus scrofaMutation(s): 0 
Gene Names: TPM1
UniProt
Find proteins for P42639 (Sus scrofa)
Explore P42639 
Go to UniProtKB:  P42639
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UniProt GroupP42639
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Troponin T2, cardiac type285Sus scrofaMutation(s): 0 
Gene Names: TNNT2
UniProt
Find proteins for A0A5G2Q8N0 (Sus scrofa)
Explore A0A5G2Q8N0 
Go to UniProtKB:  A0A5G2Q8N0
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UniProt GroupA0A5G2Q8N0
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Myosin-7
J, K
1,935Sus scrofaMutation(s): 0 
Gene Names: MYH7
UniProt
Find proteins for P79293 (Sus scrofa)
Explore P79293 
Go to UniProtKB:  P79293
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UniProt GroupP79293
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Myosin light chain 3
L, M
196Sus scrofaMutation(s): 0 
Gene Names: MYL3
UniProt
Find proteins for F1SNW4 (Sus scrofa)
Explore F1SNW4 
Go to UniProtKB:  F1SNW4
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UniProt GroupF1SNW4
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP

Query on ADP



Download:Ideal Coordinates CCD File
N [auth A],
P [auth B],
R [auth C],
T [auth D]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
O [auth A],
Q [auth B],
S [auth C],
U [auth D]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.32 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR01HL160966
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM120137

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-22
    Type: Initial release
  • Version 1.1: 2026-09-02
    Changes: Data collection, Database references