9U2V | pdb_00009u2v

Solution NMR ensemble of synthetic xeno peptide P2

PDB DOI: https://doi.org/10.2210/pdb9U2V/pdb
BMRB: 35032

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2026-01-30 Released: 2026-03-25
Deposition Author(s): Brown, S.M., Kalvoda, T., Krystufek, R., Kormanik, J.M., Makarov, M., Verner, V., Hexnerova, R., Srb, P., Andris, E., Bednarova, L., Pazderkova, M., Lepsik, M., Rezac, J., Konvalinka, J., Veverka, V., Rulisek, L., Freeland, S., Hlouchova, K.
Funding Organization(s): Human Frontier Science Program (HFSP), Ministry of Education, Youth and Sports of the Czech Republic, Czech Science Foundation, European Union (EU)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 10
Conformers Submitted: 10
Selection Criteria: all calculated structures submitted

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Xeno amino acid alphabets form peptides with familiar secondary structure

Brown, S.M., Kalvoda, T., Krystufek, R., Kormanik, J.M., Makarov, M., Verner, V., Hexnerova, R., Srb, P., Andris, E., Bednarova, L., Pazderkova, M., Lepsik, M., Rezac, J., Konvalinka, J., Veverka, V., Rulisek, L., Freeland, S., Hlouchova, K.

To be published.

Macromolecule Content

Total Structure Weight: 3.46 kDa
Atom Count: 238
Modeled Residue Count: 27
Deposited Residue Count: 27
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Synthetic xeno peptide P2	A	27	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 5 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
7C9 Query on 7C9	A	L-PEPTIDE LINKING	C₄ H₉ N O₃		--
CGU Query on CGU	A	L-PEPTIDE LINKING	C₆ H₉ N O₆		GLU
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET
NLE Query on NLE	A	L-PEPTIDE LINKING	C₆ H₁₃ N O₂		LEU
NVA Query on NVA	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂		VAL

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 10
Conformers Submitted: 10
Selection Criteria: all calculated structures submitted

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-03-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Human Frontier Science Program (HFSP)	France	RGEC27/2023
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	e-INFRA CZ (ID:90254)
Czech Science Foundation	Czech Republic	26-22168S
European Union (EU)	European Union	101004806 (MOSBRI-2024-277)