Solution NMR ensemble of synthetic xeno peptide P2
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1.5 mM NA- Synthetic xeno peptide P2 | 95% H2O/5% D2O | 10 mM PBS mM | 7.4 | 1 atm | 298.15 | Bruker AVANCE 850 |
| 2 | 2D 1H-1H TOCSY | 1.5 mM NA- Synthetic xeno peptide P2 | 95% H2O/5% D2O | 10 mM PBS mM | 7.4 | 1 atm | 298.15 | Bruker AVANCE 850 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 850 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | all calculated structures submitted |
| Conformers Calculated Total Number | 10 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | NMRFAM-SPARKY | Lee, Tonelli, and Markley | |
| 4 | peak picking | NMRFAM-SPARKY | Lee, Tonelli, and Markley | |
