9HPB | pdb_00009hpb

Mouse phosphomannomutase 2 in apo state from crystals with PEG 8000

PDB DOI: https://doi.org/10.2210/pdb9HPB/pdb

Classification: ISOMERASE
Organism(s): Mus musculus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-12-12 Released: 2025-12-24
Deposition Author(s): Ramon-Maiques, S., Del Cano-Ochoa, F., Company, R.
Funding Organization(s): Ministerio de Ciencia e Innovacion (MCIN)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.43 Å
R-Value Free:
0.271 (Depositor), 0.269 (DCC)
R-Value Work:
0.234 (Depositor), 0.234 (DCC)
R-Value Observed:
0.236 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

High conformational flexibility of phosphomannomutase 2: Implications for functioning mechanisms, stability and pharmacological chaperone design

Del Cano-Ochoa, F., Vilar, M., Vilas, A., Company, R., Perez, B., Ramon-Maiques, S.

To be published.

Macromolecule Content

Total Structure Weight: 167.59 kDa
Atom Count: 11,765
Modeled Residue Count: 1,450
Deposited Residue Count: 1,464
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphomannomutase 2	A B C [auth D] D [auth F] E [auth C] A, B, C [auth D], D [auth F], E [auth C], F [auth E]	244	Mus musculus	Mutation(s): 0 Gene Names: Pmm2 EC: 5.4.2.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Z2M7 (Mus musculus) Explore Q9Z2M7 Go to UniProtKB: Q9Z2M7
IMPC: MGI:1859214
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9Z2M7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL (Subject of Investigation/LOI) Query on CL Download Ideal Coordinates CCD File SDF format, chain O [auth D] SDF format, chain T [auth C] SDF format, chain Y [auth E] SDF format, chain I [auth A] MOL2 format, chain O [auth D] MOL2 format, chain T [auth C] MOL2 format, chain Y [auth E] MOL2 format, chain I [auth A] mmCIF format, chain O [auth D] mmCIF format, chain T [auth C] mmCIF format, chain Y [auth E] mmCIF format, chain I [auth A]	I [auth A], O [auth D], T [auth C], Y [auth E]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain I [auth A] Focus chain O [auth D] Focus chain T [auth C] Focus chain Y [auth E] Interactions & Density Focus chain I [auth A] Focus chain O [auth D] Focus chain T [auth C] Focus chain Y [auth E]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain K [auth B] SDF format, chain L [auth B] SDF format, chain M [auth D] SDF format, chain R [auth F] SDF format, chain X [auth E] SDF format, chain W [auth E] SDF format, chain S [auth C] SDF format, chain Q [auth F] SDF format, chain N [auth D] SDF format, chain H [auth A] MOL2 format, chain G [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth B] MOL2 format, chain M [auth D] MOL2 format, chain R [auth F] MOL2 format, chain X [auth E] MOL2 format, chain W [auth E] MOL2 format, chain S [auth C] MOL2 format, chain Q [auth F] MOL2 format, chain N [auth D] MOL2 format, chain H [auth A] mmCIF format, chain G [auth A] mmCIF format, chain K [auth B] mmCIF format, chain L [auth B] mmCIF format, chain M [auth D] mmCIF format, chain R [auth F] mmCIF format, chain X [auth E] mmCIF format, chain W [auth E] mmCIF format, chain S [auth C] mmCIF format, chain Q [auth F] mmCIF format, chain N [auth D] mmCIF format, chain H [auth A]	G [auth A] H [auth A] K [auth B] L [auth B] M [auth D] G [auth A], H [auth A], K [auth B], L [auth B], M [auth D], N [auth D], Q [auth F], R [auth F], S [auth C], W [auth E], X [auth E]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth D] Focus chain N [auth D] Focus chain Q [auth F] Focus chain R [auth F] Focus chain S [auth C] Focus chain W [auth E] Focus chain X [auth E] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth D] Focus chain N [auth D] Focus chain Q [auth F] Focus chain R [auth F] Focus chain S [auth C] Focus chain W [auth E] Focus chain X [auth E]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain P [auth D] SDF format, chain V [auth C] SDF format, chain U [auth C] MOL2 format, chain J [auth A] MOL2 format, chain P [auth D] MOL2 format, chain V [auth C] MOL2 format, chain U [auth C] mmCIF format, chain J [auth A] mmCIF format, chain P [auth D] mmCIF format, chain V [auth C] mmCIF format, chain U [auth C]	J [auth A], P [auth D], U [auth C], V [auth C]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain P [auth D] Focus chain U [auth C] Focus chain V [auth C] Interactions & Density Focus chain J [auth A] Focus chain P [auth D] Focus chain U [auth C] Focus chain V [auth C]