7XRV

Bacteroides thetaiotaomicron ferulic acid esterase - S150A (BT_4077-S150A) complex with trans-methylferulate

PDB DOI: https://doi.org/10.2210/pdb7XRV/pdb

Classification: HYDROLASE
Organism(s): Bacteroides thetaiotaomicron VPI-5482
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2022-05-11 Released: 2023-11-22
Deposition Author(s): Du, G.M., Wang, Y.L., Xin, F.J.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free: 0.228
R-Value Work: 0.179
R-Value Observed: 0.180

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Insights into the regulatory mechanism of BtFae activity by oligomerization and a distinct substrate binding pocket adjacent to the active site

Du, G.M., Wang, Y.L., Xin, F.J.

To be published.

Macromolecule Content

Total Structure Weight: 335.1 kDa
Atom Count: 22,132
Modelled Residue Count: 2,680
Deposited Residue Count: 2,910
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferulic acid esterase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	291	Bacteroides thetaiotaomicron VPI-5482	Mutation(s): 1 Gene Names: BT_4077
UniProt
Find proteins for Q8A0E4 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A0E4 Go to UniProtKB: Q8A0E4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8A0E4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SZQ (Subject of Investigation/LOI) Query on SZQ Download Ideal Coordinates CCD File SDF format, chain L [auth A] SDF format, chain N [auth B] SDF format, chain R [auth E] SDF format, chain T [auth F] SDF format, chain V [auth G] SDF format, chain X [auth H] SDF format, chain Z [auth I] MOL2 format, chain L [auth A] MOL2 format, chain N [auth B] MOL2 format, chain R [auth E] MOL2 format, chain T [auth F] MOL2 format, chain V [auth G] MOL2 format, chain X [auth H] MOL2 format, chain Z [auth I]	L [auth A] N [auth B] R [auth E] T [auth F] V [auth G] L [auth A], N [auth B], R [auth E], T [auth F], V [auth G], X [auth H], Z [auth I]	Trans-methylferulate C₁₁ H₁₂ O₄ AUJXJFHANFIVKH-GQCTYLIASA-N		Interactions Focus chain L [auth A] Focus chain N [auth B] Focus chain R [auth E] Focus chain T [auth F] Focus chain V [auth G] Focus chain X [auth H] Focus chain Z [auth I] Interactions & Density Focus chain L [auth A] Focus chain N [auth B] Focus chain R [auth E] Focus chain T [auth F] Focus chain V [auth G] Focus chain X [auth H] Focus chain Z [auth I]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain AA [auth I] SDF format, chain K [auth A] SDF format, chain M [auth B] SDF format, chain O [auth C] SDF format, chain P [auth D] SDF format, chain Q [auth E] SDF format, chain S [auth F] SDF format, chain U [auth G] SDF format, chain W [auth H] SDF format, chain Y [auth I] MOL2 format, chain AA [auth I] MOL2 format, chain K [auth A] MOL2 format, chain M [auth B] MOL2 format, chain O [auth C] MOL2 format, chain P [auth D] MOL2 format, chain Q [auth E] MOL2 format, chain S [auth F] MOL2 format, chain U [auth G] MOL2 format, chain W [auth H] MOL2 format, chain Y [auth I]	AA [auth I] K [auth A] M [auth B] O [auth C] P [auth D] AA [auth I], K [auth A], M [auth B], O [auth C], P [auth D], Q [auth E], S [auth F], U [auth G], W [auth H], Y [auth I]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain AA [auth I] Focus chain K [auth A] Focus chain M [auth B] Focus chain O [auth C] Focus chain P [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain W [auth H] Focus chain Y [auth I] Interactions & Density Focus chain AA [auth I] Focus chain K [auth A] Focus chain M [auth B] Focus chain O [auth C] Focus chain P [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain W [auth H] Focus chain Y [auth I]