7RR5

Structure of ribosomal complex bound with Rbg1/Tma46


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.23 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells.

Zeng, F.Li, X.Pires-Alves, M.Chen, X.Hawk, C.W.Jin, H.

(2021) Cell Rep 37: 109877-109877

  • DOI: https://doi.org/10.1016/j.celrep.2021.109877
  • Primary Citation of Related Structures:  
    7RR5

  • PubMed Abstract: 

    Conserved developmentally regulated guanosine triphosphate (GTP)-binding proteins (Drgs) and their binding partner Drg family regulatory proteins (Dfrps) are important for embryonic development, cellular growth control, differentiation, and proliferation. Here, we report that the yeast Drg1/Dfrp1 ortholog Rbg1/Tma46 facilitates translational initiation, elongation, and termination by suppressing prolonged ribosome pausing. Consistent with the genome-wide observations, deletion of Rbg1 exacerbates the growth defect resulting from translation stalling, and Rbg1 stabilizes mRNAs against no-go decay. Furthermore, we provide a cryoelectron microscopy (cryo-EM) structure of the 80S ribosome bound with Rbg1/Tma46 that reveals the molecular interactions responsible for Rbg1/Tma46 function. The Rbg1 subunit binds to the GTPase association center of the ribosome and the A-tRNA, and the N-terminal zinc finger domain of the Tma46 subunit binds to the 40S, establishing an interaction critical for the ribosomal association. Our results answer the fundamental question of how a paused ribosome resumes translation and show that Drg1/Dfrp1 play a critical role in ensuring orderly translation.


  • Organizational Affiliation

    Department of Biochemistry, University of Illinois at Urbana-Champaign, 600 S. Mathews Avenue, Urbana, IL 61801, USA; Department of Biology, School of Life Sciences, Southern University of Science and Technology, No. 1088 Xueyuan Blvd., Shenzhen 518055, People's Republic of China.


Macromolecules

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L2-BD [auth LA]254Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
RPL3 isoform 1E [auth LB]387Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for A0A6A5Q627 (Saccharomyces cerevisiae)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
RPL4A isoform 1F [auth LC]362Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for A0A6A5Q3W0 (Saccharomyces cerevisiae)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
RPL5 isoform 1G [auth LD]297Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for A0A6A5Q0W8 (Saccharomyces cerevisiae)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6H [auth LE]176Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7-AI [auth LF]244Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8-AJ [auth LG]256Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9-AK [auth LH]191Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
RPL10 isoform 1L [auth LI]221Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for A0A6A5PUZ5 (Saccharomyces cerevisiae)
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
RPL11B isoform 1M [auth LJ]174Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13N [auth LL]199Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14-AO [auth LM]138Saccharomyces cerevisiaeMutation(s): 0 
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Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15-AP [auth LN]204Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L16-AQ [auth LO]199Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17-AR [auth LP]184Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18-BS [auth LQ]186Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19-AT [auth LR]189Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L20-AU [auth LS]172Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21-AV [auth LT]160Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22-AW [auth LU]121Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23-BX [auth LV]137Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
RPL24A isoform 1Y [auth LW]155Saccharomyces cerevisiaeMutation(s): 0 
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Find proteins for A0A6A5PY83 (Saccharomyces cerevisiae)
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L25Z [auth LX]142Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L26-AAA [auth LY]127Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27BA [auth LZ]136Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28CA [auth La]149Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
RPL29 isoform 1DA [auth Lb]59Saccharomyces cerevisiaeMutation(s): 0 
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Find proteins for A0A6A5PWR1 (Saccharomyces cerevisiae)
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30EA [auth Lc]105Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31-AFA [auth Ld]113Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
RPL32 isoform 1GA [auth Le]130Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for A0A6A5Q1M9 (Saccharomyces cerevisiae)
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L33-AHA [auth Lf]107Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34-AIA [auth Lg]121Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35-AJA [auth Lh]120Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36-AKA [auth Li]100Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37LA [auth Lj]88Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
RPL38 isoform 1MA [auth Lk]78Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39NA [auth Ll]51Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40OA [auth Lm]128Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41-APA [auth Ln]25Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L42-AQA [auth Lo]106Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L43-ARA [auth Lp]92Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
RPP0 isoform 1SA [auth P0]312Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
RPL12A isoform 1TA [auth P2]165Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S0VA [auth SA]252Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
RPS1A isoform 1WA [auth SB]255Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
RPS2 isoform 1XA [auth SC]254Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
RPS3 isoform 1YA [auth SD]240Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4ZA [auth SE]261Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Rps5pAB [auth SF]225Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6BB [auth SG]236Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7CB [auth SH]190Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
RPS8A isoform 1DB [auth SI]200Saccharomyces cerevisiaeMutation(s): 0 
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Find proteins for A0A6A5Q1H1 (Saccharomyces cerevisiae)
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9-AEB [auth SJ]197Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10-AFB [auth SK]105Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11-BGB [auth SL]156Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12HB [auth SM]143Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13IB [auth SN]151Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14-BJB [auth SO]138Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
RPS15 isoform 1KB [auth SP]142Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16-ALB [auth SQ]143Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17-AMB [auth SR]136Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18-BNB [auth SS]146Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19-AOB [auth ST]144Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
RPS20 isoform 1PB [auth SU]121Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21-AQB [auth SV]87Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
RPS22A isoform 1RB [auth SW]130Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23SB [auth SX]145Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24TB [auth SY]135Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
RPS25A isoform 1UB [auth SZ]108Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
RPS26B isoform 1VB [auth Sa]119Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27-AWB [auth Sb]82Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
RPS28A isoform 1XB [auth Sc]67Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
RPS29A isoform 1YB [auth Sd]56Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30ZB [auth Se]63Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S31AC [auth Sf]152Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit beta-like proteinBC [auth Sg]319Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 5AFC [auth 5]157Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosome-interacting GTPase 1GC [auth R]410Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PACBIOSEQ_LOCUS31PACBIOSEQ_LOCUS32PACBIOSEQ_LOCUS33PACBIOSEQ_LOCUS34SCNYR20_0016002600SCP684_0016002600
UniProt
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
Translation machinery-associated protein 46HC [auth T]345Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 87
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L1IC [auth L1]210Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
25S rRNAA [auth C1]3,396Saccharomyces cerevisiae
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Entity ID: 2
MoleculeChains LengthOrganismImage
5S rRNAB [auth C4]121Saccharomyces cerevisiae
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Entity ID: 3
MoleculeChains LengthOrganismImage
5.8S rRNAC [auth C3]158Saccharomyces cerevisiae
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Entity ID: 47
MoleculeChains LengthOrganismImage
18S rRNAUA [auth C2]1,800Saccharomyces cerevisiae
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Entity ID: 81
MoleculeChains LengthOrganismImage
A-tRNACC [auth A]76Saccharomyces cerevisiae
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Entity ID: 82
MoleculeChains LengthOrganismImage
P-tRNADC [auth P]76Saccharomyces cerevisiae
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Entity ID: 83
MoleculeChains LengthOrganismImage
mRNAEC [auth m]16Saccharomyces cerevisiae
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ASP
Query on ASP

Download Ideal Coordinates CCD File 
TJ [auth C1]ASPARTIC ACID
C4 H7 N O4
CKLJMWTZIZZHCS-REOHCLBHSA-N
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
CK [auth Lg]
DK [auth Lj]
EK [auth Lm]
FK [auth Lo]
GK [auth Lp]
CK [auth Lg],
DK [auth Lj],
EK [auth Lm],
FK [auth Lo],
GK [auth Lp],
ON [auth Sd],
PN [auth Sf],
RN [auth T]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)
Query on MG

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AD [auth C1]
AE [auth C1]
AF [auth C1]
AG [auth C1]
AH [auth C1]
AD [auth C1],
AE [auth C1],
AF [auth C1],
AG [auth C1],
AH [auth C1],
AI [auth C1],
AJ [auth C1],
AK [auth LV],
AL [auth C2],
AM [auth C2],
AN [auth C2],
BD [auth C1],
BE [auth C1],
BF [auth C1],
BG [auth C1],
BH [auth C1],
BI [auth C1],
BJ [auth C1],
BK [auth Le],
BL [auth C2],
BM [auth C2],
BN [auth C2],
CD [auth C1],
CE [auth C1],
CF [auth C1],
CG [auth C1],
CH [auth C1],
CI [auth C1],
CJ [auth C1],
CL [auth C2],
CM [auth C2],
CN [auth C2],
DD [auth C1],
DE [auth C1],
DF [auth C1],
DG [auth C1],
DH [auth C1],
DI [auth C1],
DJ [auth C1],
DL [auth C2],
DM [auth C2],
DN [auth C2],
ED [auth C1],
EE [auth C1],
EF [auth C1],
EG [auth C1],
EH [auth C1],
EI [auth C1],
EJ [auth C1],
EL [auth C2],
EM [auth C2],
EN [auth C2],
FD [auth C1],
FE [auth C1],
FF [auth C1],
FG [auth C1],
FH [auth C1],
FI [auth C1],
FJ [auth C1],
FL [auth C2],
FM [auth C2],
FN [auth C2],
GD [auth C1],
GE [auth C1],
GF [auth C1],
GG [auth C1],
GH [auth C1],
GI [auth C1],
GJ [auth C1],
GL [auth C2],
GM [auth C2],
GN [auth C2],
HD [auth C1],
HE [auth C1],
HF [auth C1],
HG [auth C1],
HH [auth C1],
HI [auth C1],
HJ [auth C1],
HK [auth C2],
HL [auth C2],
HM [auth C2],
HN [auth C2],
ID [auth C1],
IE [auth C1],
IF [auth C1],
IG [auth C1],
IH [auth C1],
II [auth C1],
IJ [auth C1],
IK [auth C2],
IL [auth C2],
IM [auth C2],
IN [auth C2],
JC [auth C1],
JD [auth C1],
JE [auth C1],
JF [auth C1],
JG [auth C1],
JH [auth C1],
JI [auth C1],
JJ [auth C1],
JK [auth C2],
JL [auth C2],
JM [auth C2],
JN [auth C2],
KC [auth C1],
KD [auth C1],
KE [auth C1],
KF [auth C1],
KG [auth C1],
KH [auth C1],
KI [auth C1],
KJ [auth C1],
KK [auth C2],
KL [auth C2],
KM [auth C2],
KN [auth C2],
LC [auth C1],
LD [auth C1],
LE [auth C1],
LF [auth C1],
LG [auth C1],
LH [auth C1],
LI [auth C1],
LJ [auth C1],
LK [auth C2],
LL [auth C2],
LM [auth C2],
LN [auth SC],
MC [auth C1],
MD [auth C1],
ME [auth C1],
MF [auth C1],
MG [auth C1],
MH [auth C1],
MI [auth C1],
MJ [auth C1],
MK [auth C2],
ML [auth C2],
MM [auth C2],
MN [auth SX],
NC [auth C1],
ND [auth C1],
NE [auth C1],
NF [auth C1],
NG [auth C1],
NH [auth C1],
NI [auth C1],
NJ [auth C1],
NK [auth C2],
NL [auth C2],
NM [auth C2],
NN [auth Sa],
OC [auth C1],
OD [auth C1],
OE [auth C1],
OF [auth C1],
OG [auth C1],
OH [auth C1],
OI [auth C1],
OJ [auth C1],
OK [auth C2],
OL [auth C2],
OM [auth C2],
PC [auth C1],
PD [auth C1],
PE [auth C1],
PF [auth C1],
PG [auth C1],
PH [auth C1],
PI [auth C1],
PJ [auth C1],
PK [auth C2],
PL [auth C2],
PM [auth C2],
QC [auth C1],
QD [auth C1],
QE [auth C1],
QF [auth C1],
QG [auth C1],
QH [auth C1],
QI [auth C1],
QJ [auth C1],
QK [auth C2],
QL [auth C2],
QM [auth C2],
QN [auth P],
RC [auth C1],
RD [auth C1],
RE [auth C1],
RF [auth C1],
RG [auth C1],
RH [auth C1],
RI [auth C1],
RJ [auth C1],
RK [auth C2],
RL [auth C2],
RM [auth C2],
SC [auth C1],
SD [auth C1],
SE [auth C1],
SF [auth C1],
SG [auth C1],
SH [auth C1],
SI [auth C1],
SJ [auth C1],
SK [auth C2],
SL [auth C2],
SM [auth C2],
TC [auth C1],
TD [auth C1],
TE [auth C1],
TF [auth C1],
TG [auth C1],
TH [auth C1],
TI [auth C1],
TK [auth C2],
TL [auth C2],
TM [auth C2],
UC [auth C1],
UD [auth C1],
UE [auth C1],
UF [auth C1],
UG [auth C1],
UH [auth C1],
UI [auth C1],
UJ [auth C4],
UK [auth C2],
UL [auth C2],
UM [auth C2],
VC [auth C1],
VD [auth C1],
VE [auth C1],
VF [auth C1],
VG [auth C1],
VH [auth C1],
VI [auth C1],
VJ [auth LA],
VK [auth C2],
VL [auth C2],
VM [auth C2],
WC [auth C1],
WD [auth C1],
WE [auth C1],
WF [auth C1],
WG [auth C1],
WH [auth C1],
WI [auth C1],
WJ [auth LA],
WK [auth C2],
WL [auth C2],
WM [auth C2],
XC [auth C1],
XD [auth C1],
XE [auth C1],
XF [auth C1],
XG [auth C1],
XH [auth C1],
XI [auth C1],
XJ [auth LB],
XK [auth C2],
XL [auth C2],
XM [auth C2],
YC [auth C1],
YD [auth C1],
YE [auth C1],
YF [auth C1],
YG [auth C1],
YH [auth C1],
YI [auth C1],
YJ [auth LN],
YK [auth C2],
YL [auth C2],
YM [auth C2],
ZC [auth C1],
ZD [auth C1],
ZE [auth C1],
ZF [auth C1],
ZG [auth C1],
ZH [auth C1],
ZI [auth C1],
ZJ [auth LP],
ZK [auth C2],
ZL [auth C2],
ZM [auth C2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
5CT
Query on 5CT
FC [auth 5]PEPTIDE LINKINGC10 H23 N3 O3LYS
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.23 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM120552

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-10
    Type: Initial release