7QUU

Red1-Iss10 complex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex.

Foucher, A.E.Touat-Todeschini, L.Juarez-Martinez, A.B.Rakitch, A.Laroussi, H.Karczewski, C.Acajjaoui, S.Soler-Lopez, M.Cusack, S.Mackereth, C.D.Verdel, A.Kadlec, J.

(2022) Nat Commun 13: 4969-4969

  • DOI: https://doi.org/10.1038/s41467-022-32542-3
  • Primary Citation of Related Structures:  
    7QUU, 7QY5

  • PubMed Abstract: 

    To eliminate specific or aberrant transcripts, eukaryotes use nuclear RNA-targeting complexes that deliver them to the exosome for degradation. S. pombe MTREC, and its human counterpart PAXT, are key players in this mechanism but inner workings of these complexes are not understood in sufficient detail. Here, we present an NMR structure of an MTREC scaffold protein Red1 helix-turn-helix domain bound to the Iss10 N-terminus and show this interaction is required for proper cellular growth and meiotic mRNA degradation. We also report a crystal structure of a Red1-Ars2 complex explaining mutually exclusive interactions of hARS2 with various ED/EGEI/L motif-possessing RNA regulators, including hZFC3H1 of PAXT, hFLASH or hNCBP3. Finally, we show that both Red1 and hZFC3H1 homo-dimerize via their coiled-coil regions indicating that MTREC and PAXT likely function as dimers. Our results, combining structures of three Red1 interfaces with in vivo studies, provide mechanistic insights into conserved features of MTREC/PAXT architecture.


  • Organizational Affiliation

    Univ. Grenoble Alpes, CNRS, CEA, IBS, F-38000, Grenoble, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C7D4.14c55Schizosaccharomyces pombeMutation(s): 0 
Gene Names: SPAC7D4.14c
UniProt
Find proteins for O14269 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore O14269 
Go to UniProtKB:  O14269
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14269
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NURS complex subunit red149Schizosaccharomyces pombeMutation(s): 0 
Gene Names: red1iss3SPAC1006.03c
UniProt
Find proteins for Q9UTR8 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore Q9UTR8 
Go to UniProtKB:  Q9UTR8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UTR8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
ATIP-AvenirFrance--
Agence Nationale de la Recherche (ANR)France--
Centre National de la Recherche Scientifique (CNRS)FranceIR-RMN-THC Fr3050

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-07
    Type: Initial release
  • Version 1.1: 2022-11-16
    Changes: Database references