7OSC

Solution structure of antimicrobial peptide cathelicidin-1 PcDode from sperm whale Physeter catodon

PDB DOI: https://doi.org/10.2210/pdb7OSC/pdb
BMRB: 34633

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Physeter catodon
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-06-08 Released: 2021-09-15
Deposition Author(s): Mironov, P.A., Myshkin, M.Y., Shenkarev, Z.O.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Dodecapeptide Cathelicidins of Cetartiodactyla: Structure, Mechanism of Antimicrobial Action, and Synergistic Interaction With Other Cathelicidins

Bolosov, I.A., Panteleev, P.V., Sychev, S.V., Sukhanov, S.V., Mironov, P.A., Myshkin, M.Y., Shenkarev, Z.O., Ovchinnikova, T.V.

(2021) Front Microbiol 12: 2249

DOI: https://doi.org/10.3389/fmicb.2021.725526

Macromolecule Content

Total Structure Weight: 2.79 kDa
Atom Count: 190
Modelled Residue Count: 24
Deposited Residue Count: 24
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cathelicidin-1-like	A	24	Physeter catodon	Mutation(s): 0 Gene Names: LOC102973809
UniProt
Find proteins for A0A2Y9FJE4 (Physeter macrocephalus) Explore A0A2Y9FJE4 Go to UniProtKB: A0A2Y9FJE4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2Y9FJE4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PCA Query on PCA	A	L-PEPTIDE LINKING	C₅ H₇ N O₃		GLN

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-09-15

Deposition Author(s):

Shenkarev, Z.O.

Revision History (Full details and data files)

Version 1.0: 2021-09-15
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.