7E5N

crystal structure of cis assembled TROP-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.243 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the cis and trans assembly of human trophoblast cell surface antigen 2.

Sun, M.Zhang, H.Jiang, M.Chai, Y.Qi, J.Gao, G.F.Tan, S.

(2021) iScience 24: 103190-103190

  • DOI: https://doi.org/10.1016/j.isci.2021.103190
  • Primary Citation of Related Structures:  
    7E5M, 7E5N

  • PubMed Abstract: 

    Human trophoblast cell surface antigen 2 (TROP-2) is an important target of tumor therapy, and antibody-drug conjugates with sacituzumab targeting TROP-2 have been approved for the treatment of triple-negative breast cancer. Here, we report the crystal structures of TROP-2-ECD, which can be either cis- or trans- dimers depending on which distinct but overlapping interfaces is used to engage with monomers. The cis- or trans -tetrameric forms of TROP-2 can also be assembled with a non-overlapping interface with either cis - or trans- dimerization, suggesting that cis - and trans- dimers cluster on the cell surface. The binding site of sacituzumab on TROP-2 is mapped to be located on a stretched polypeptide in CPD (Q237-Q252), which is not involved in either cis- or trans- interactions. The present findings will improve understanding of the molecular assembly of TROP-2 on tumor cells and shed light on future design of biologics for tumor therapy.


  • Organizational Affiliation

    Research Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing 100101, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tumor-associated calcium signal transducer 2
A, B, C, D
323Homo sapiensMutation(s): 0 
Gene Names: TACSTD2GA733-1M1S1TROP2
UniProt & NIH Common Fund Data Resources
Find proteins for P09758 (Homo sapiens)
Explore P09758 
Go to UniProtKB:  P09758
PHAROS:  P09758
GTEx:  ENSG00000184292 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09758
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.243 
  • Space Group: P 43 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 145.144α = 90
b = 145.144β = 90
c = 217.716γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-15
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description