6YSW

E. coli anaerobic trifunctional enzyme subunit-alpha in complex with coenzyme A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.203 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structural basis for different membrane-binding properties of E. coli anaerobic and human mitochondrial beta-oxidation trifunctional enzymes

Sah-Teli, S.K.Pinkas, M.Hynonen, M.J.Butcher, S.J.Wierenga, R.K.Novacek, J.Venkatesan, R.

(2023) Structure 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fatty acid oxidation complex subunit alphaA [auth B],
B [auth A]
728Escherichia coli K-12Mutation(s): 0 
Gene Names: fadJyfcXb2341JW2338
EC: 4.2.1.17 (PDB Primary Data), 5.1.2.3 (PDB Primary Data), 1.1.1.35 (PDB Primary Data)
UniProt
Find proteins for P77399 (Escherichia coli (strain K12))
Explore P77399 
Go to UniProtKB:  P77399
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP77399
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
COA (Subject of Investigation/LOI)
Query on COA

Download Ideal Coordinates CCD File 
P [auth A]COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth B]
D [auth B]
E [auth B]
F [auth B]
G [auth A]
C [auth B],
D [auth B],
E [auth B],
F [auth B],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth A],
L [auth A],
M [auth A],
N [auth A],
O [auth A]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.203 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 204.793α = 90
b = 90.724β = 123.165
c = 128.625γ = 90
Software Package:
Software NamePurpose
autoPROCdata collection
STARANISOdata scaling
Aimlessdata scaling
PHASERphasing
PHENIXrefinement
Cootmodel building
autoPROCdata reduction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of FinlandFinland289024, 293369, 319194

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-12
    Type: Initial release
  • Version 1.1: 2023-05-17
    Changes: Database references
  • Version 1.2: 2024-02-07
    Changes: Data collection, Refinement description