6WA5

Solution NMR Structure of the G4L/Q5K/G6S (NOS) Unmyristoylated Feline Immunodeficiency Virus Matrix Protein


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and Mechanistic Studies of the Rare Myristoylation Signal of the Feline Immunodeficiency Virus.

Brown, J.B.Summers, H.R.Brown, L.A.Marchant, J.Canova, P.N.O'Hern, C.T.Abbott, S.T.Nyaunu, C.Maxwell, S.Johnson, T.Moser, M.B.Ablan, S.D.Carter, H.Freed, E.O.Summers, M.F.

(2020) J Mol Biol 432: 4076-4091

  • DOI: https://doi.org/10.1016/j.jmb.2020.05.008
  • Primary Citation of Related Structures:  
    6WA3, 6WA4, 6WA5

  • PubMed Abstract: 

    All retroviruses encode a Gag polyprotein containing an N-terminal matrix domain (MA) that anchors Gag to the plasma membrane and recruits envelope glycoproteins to virus assembly sites. Membrane binding by the Gag protein of HIV-1 and most other lentiviruses is dependent on N-terminal myristoylation of MA by host N-myristoyltransferase enzymes (NMTs), which recognize a six-residue "myristoylation signal" with consensus sequence: M 1 GXXX[ST]. For unknown reasons, the feline immunodeficiency virus (FIV), which infects both domestic and wild cats, encodes a non-consensus myristoylation sequence not utilized by its host or by other mammals (most commonly: M 1 GNGQG). To explore the evolutionary basis for this sequence, we compared the structure, dynamics, and myristoylation properties of native FIV MA with a mutant protein containing a consensus feline myristoylation motif (MA NOS ) and examined the impact of MA mutations on virus assembly and ability to support spreading infection. Unexpectedly, myristoylation efficiency of MA NOS in Escherichia coli by co-expressed mammalian NMT was reduced by ~70% compared to the wild-type protein. NMR studies revealed that residues of the N-terminal myristoylation signal are fully exposed and mobile in the native protein but partially sequestered in the MA NOS chimera, suggesting that the unusual FIV sequence is conserved to promote exposure and efficient myristoylation of the MA N terminus. In contrast, virus assembly studies indicate that the MA NOS mutation does not affect virus assembly, but does prevent virus spread, in feline kidney cells. Our findings indicate that residues of the FIV myristoylation sequence play roles in replication beyond NMT recognition and Gag-membrane binding.


  • Organizational Affiliation

    Howard Hughes Medical Institute and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21250, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Matrix protein126Feline immunodeficiency virusMutation(s): 3 
Gene Names: GAG
UniProt
Find proteins for P16087 (Feline immunodeficiency virus (isolate Petaluma))
Explore P16087 
Go to UniProtKB:  P16087
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16087
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32 GM066706
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM042561
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesIMSD R25 GM-055036-18
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU54 GM103297
National Science Foundation (NSF, United States)United StatesDGE-1144243
National Science Foundation (NSF, United States)United States1460653
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR37 AI30917
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-22
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other