6NU4

Solution structure of the Arabidopsis thaliana RALF8 peptide


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Function and solution structure of the Arabidopsis thaliana RALF8 peptide.

Frederick, R.O.Haruta, M.Tonelli, M.Lee, W.Cornilescu, G.Cornilescu, C.C.Sussman, M.R.Markley, J.L.

(2019) Protein Sci 28: 1115-1126

  • DOI: https://doi.org/10.1002/pro.3628
  • Primary Citation of Related Structures:  
    6NU4

  • PubMed Abstract: 

    We report the recombinant preparation from Escherichia coli cells of samples of two closely related, small, secreted cysteine-rich plant peptides: rapid alkalinization factor 1 (RALF1) and rapid alkalinization factor 8 (RALF8). Purified samples of the native sequence of RALF8 exhibited well-resolved nuclear magnetic resonance (NMR) spectra and also biological activity through interaction with a plant receptor kinase, cytoplasmic calcium mobilization, and in vivo root growth suppression. By contrast, RALF1 could only be isolated from inclusion bodies as a construct containing an N-terminal His-tag; its poorly resolved NMR spectrum was indicative of aggregation. We prepared samples of the RALF8 peptide labeled with 15 N and 13 C for NMR analysis and obtained near complete 1 H, 13 C, and 15 N NMR assignments; determined the disulfide pairing of its four cysteine residues; and examined its solution structure. RALF8 is mostly disordered except for the two loops spanned by each of its two disulfide bridges.


  • Organizational Affiliation

    National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein RALF-like 856Arabidopsis thalianaMutation(s): 0 
Gene Names: RALFL8At1g61563T25B24
UniProt
Find proteins for Q1ECR9 (Arabidopsis thaliana)
Explore Q1ECR9 
Go to UniProtKB:  Q1ECR9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ1ECR9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR01 CA073808
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41 RR02301
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41 GM66326
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesRR02781
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesRR08438
National Science Foundation (NSF, United States)United StatesDMB-8415048
National Science Foundation (NSF, United States)United StatesOIA-9977486
National Science Foundation (NSF, United States)United StatesBIR-9214394

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-08
    Type: Initial release
  • Version 1.1: 2019-05-29
    Changes: Data collection, Database references
  • Version 1.2: 2019-11-27
    Changes: Author supporting evidence
  • Version 1.3: 2023-06-14
    Changes: Database references, Other