5OAO

Solution structure of the complexed RCD1-RST


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structure of Radical-Induced Cell Death1 Hub Domain Reveals a Common alpha alpha-Scaffold for Disorder in Transcriptional Networks.

Bugge, K.Staby, L.Kemplen, K.R.O'Shea, C.Bendsen, S.K.Jensen, M.K.Olsen, J.G.Skriver, K.Kragelund, B.B.

(2018) Structure 26: 734-746.e7

  • DOI: https://doi.org/10.1016/j.str.2018.03.013
  • Primary Citation of Related Structures:  
    5OAO, 5OAP

  • PubMed Abstract: 

    Communication within cells relies on a few protein nodes called hubs, which organize vast interactomes with many partners. Frequently, hub proteins are intrinsically disordered conferring multi-specificity and dynamic communication. Conversely, folded hub proteins may organize networks using disordered partners. In this work, the structure of the RST domain, a unique folded hub, is solved by nuclear magnetic resonance spectroscopy and small-angle X-ray scattering, and its complex with a region of the transcription factor DREB2A is provided through data-driven HADDOCK modeling and mutagenesis analysis. The RST fold is unique, but similar structures are identified in the PAH (paired amphipathic helix), TAFH (TATA-box-associated factor homology), and NCBD (nuclear coactivator binding domain) domains. We designate them as a group the αα hubs, as they share an αα-hairpin super-secondary motif, which serves as an organizing platform for malleable helices of varying topology. This allows for partner adaptation, exclusion, and selection. Our findings provide valuable insights into structural features enabling signaling fidelity.


  • Organizational Affiliation

    Department of Biology, University of Copenhagen, Ole Maaloes Vej 5, Copenhagen 2200, Denmark.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RST domain from the Radical-Induced Cell Death173Arabidopsis thalianaMutation(s): 0 
Gene Names: RCD1ATP8CEO1At1g32230F3C3.1
UniProt
Find proteins for Q8RY59 (Arabidopsis thaliana)
Explore Q8RY59 
Go to UniProtKB:  Q8RY59
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8RY59
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Danish Research CouncilsDenmark4181-00344
Novo Nordisk FoundationDenmark--

Revision History  (Full details and data files)

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2018-04-25
    Changes: Data collection, Database references
  • Version 1.2: 2018-05-09
    Changes: Data collection, Database references
  • Version 1.3: 2019-05-08
    Changes: Data collection
  • Version 1.4: 2023-06-14
    Changes: Data collection, Database references, Other