5I6C

The structure of the eukaryotic purine/H+ symporter, UapA, in complex with Xanthine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.70 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.296 
  • R-Value Observed: 0.298 

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This is version 1.2 of the entry. See complete history


Literature

Structure of eukaryotic purine/H(+) symporter UapA suggests a role for homodimerization in transport activity.

Alguel, Y.Amillis, S.Leung, J.Lambrinidis, G.Capaldi, S.Scull, N.J.Craven, G.Iwata, S.Armstrong, A.Mikros, E.Diallinas, G.Cameron, A.D.Byrne, B.

(2016) Nat Commun 7: 11336-11336

  • DOI: https://doi.org/10.1038/ncomms11336
  • Primary Citation of Related Structures:  
    5I6C

  • PubMed Abstract: 

    The uric acid/xanthine H(+) symporter, UapA, is a high-affinity purine transporter from the filamentous fungus Aspergillus nidulans. Here we present the crystal structure of a genetically stabilized version of UapA (UapA-G411VΔ1-11) in complex with xanthine. UapA is formed from two domains, a core domain and a gate domain, similar to the previously solved uracil transporter UraA, which belongs to the same family. The structure shows UapA in an inward-facing conformation with xanthine bound to residues in the core domain. Unlike UraA, which was observed to be a monomer, UapA forms a dimer in the crystals with dimer interactions formed exclusively through the gate domain. Analysis of dominant negative mutants is consistent with dimerization playing a key role in transport. We postulate that UapA uses an elevator transport mechanism likely to be shared with other structurally homologous transporters including anion exchangers and prestin.


  • Organizational Affiliation

    Department of Life Sciences, Imperial College London, London SW7 2AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uric acid-xanthine permease
A, B
574Aspergillus nidulans FGSC A4Mutation(s): 1 
Gene Names: uapAAN6932
Membrane Entity: Yes 
UniProt
Find proteins for Q07307 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore Q07307 
Go to UniProtKB:  Q07307
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07307
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.70 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.296 
  • R-Value Observed: 0.298 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.09α = 90
b = 173.83β = 111.11
c = 82.39γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
SHARPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-27
    Type: Initial release
  • Version 1.1: 2016-05-04
    Changes: Database references
  • Version 1.2: 2017-08-30
    Changes: Author supporting evidence