5I6A

bicyclo[3.3.2]decapeptide

PDB DOI: https://doi.org/10.2210/pdb5I6A/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2016-02-16 Released: 2016-03-09
Deposition Author(s): Bartoloni, M., Waltersperger, S., Bumann, M., Stocker, A., Darbre, T., Reymond, J.-L.
Funding Organization(s): Marie-Curie ITN BioChemLig

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.81 Å
R-Value Free: 0.077
R-Value Work: 0.061
R-Value Observed: 0.062

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Stereoselective synthesis and structure determination of a bicyclo[3.3.2]decapeptide

Bartoloni, M., Waltersperger, S., Bumann, M., Stocker, A., Darbre, T., Reymond, J.-L.

(2014) ARKIVOC 2014: 113-123

DOI: https://doi.org/10.3998/ark.5550190.p008.500

Macromolecule Content

Total Structure Weight: 2.12 kDa
Atom Count: 167
Modelled Residue Count: 20
Deposited Residue Count: 20
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ALA-PHE-GLY-LYD-VAL-PHE-PRO-GLN-ALA-GLY	A, B	10	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DMS Query on DMS Download Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B]	C [auth B]	DIMETHYL SULFOXIDE C₂ H₆ O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.81 Å
R-Value Free: 0.077
R-Value Work: 0.061
R-Value Observed: 0.062
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 12.826	α = 90
b = 23.446	β = 90
c = 41.899	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
SHELXD	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2016-03-09

Deposition Author(s):

Waltersperger, S.

Funding Organization	Location	Grant Number
Marie-Curie ITN BioChemLig	Switzerland	FP7-ITN-238434

Revision History (Full details and data files)

Version 1.0: 2016-03-09
Type: Initial release
Version 1.1: 2019-05-08
Changes: Advisory, Data collection, Derived calculations

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.