5FH9

Crystal structure of NFeoB from Escherichia coli BL21 in the apo state.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.209 

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Literature

Studies on the X-Ray and Solution Structure of FeoB from Escherichia coli BL21.

Hagelueken, G.Hoffmann, J.Schubert, E.Duthie, F.G.Florin, N.Konrad, L.Imhof, D.Behrmann, E.Morgner, N.Schiemann, O.

(2016) Biophys J 110: 2642-2650

  • DOI: https://doi.org/10.1016/j.bpj.2016.05.018
  • Primary Citation of Related Structures:  
    5FH9

  • PubMed Abstract: 

    The ferrous iron transporter FeoB is an important factor in the iron metabolism of many bacteria. Although several structural studies have been performed on its cytosolic GTPase domain (NFeoB), the full-length structure of FeoB remains elusive. Based on a crystal packing analysis that was performed on crystals of NFeoB, a trimeric structure of the FeoB channel was proposed, where the transport pore runs along the trimer axis. Because this trimer has not been observed in some subsequently solved structures of NFeoB homologs, it remains unclear whether or not the trimer is indeed functionally relevant. Here, pulsed electron-electron double resonance spectroscopy, negative stain electron microscopy, and native mass spectrometry are used to analyze the oligomeric state of different soluble and full-length FeoB constructs. The results show that the full-length protein is predominantly monomeric, whereas dimers and trimers are formed to a small percentage. Furthermore, the solution structure of the switch I region is analyzed by pulsed electron-electron double resonance spectroscopy and a new, to our knowledge, crystal structure of NFeoB from Escherichia coli BL21 is presented.


  • Organizational Affiliation

    Institute for Physical and Theoretical Chemistry,University of Bonn, Bonn, Germany. Electronic address: hagelueken@pc.uni-bonn.de.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferrous iron transport protein B
A, B
274Bacillus sp. SH51Mutation(s): 0 
Gene Names: feoB
UniProt
Find proteins for J7QA66 (Escherichia coli)
Explore J7QA66 
Go to UniProtKB:  J7QA66
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupJ7QA66
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.209 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 166.675α = 90
b = 166.675β = 90
c = 65.581γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanySFB813 C8

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-27
    Type: Initial release
  • Version 1.1: 2017-09-06
    Changes: Author supporting evidence