5EG6

CSL-RITA complex bound to DNA

• PDB DOI: https://doi.org/10.2210/pdb5EG6/pdb
• NAKB: 5EG6

• Classification: TRANSCRIPTION/DNA BINDING PROTEIN/DNA
• Organism(s): synthetic construct, Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-10-26 Released: 2017-04-26 
• Deposition Author(s): Tabaja, N.H., Kovall, R.A.
• Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free: 0.238 
• R-Value Work: 0.198 
• R-Value Observed: 0.200 

Literature

CSL-RITA complex bound to DNA

Tabaja, N.H., Kovall, R.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 60.61 kDa 
• Atom Count: 4,285 
• Modelled Residue Count: 459 
• Deposited Residue Count: 468 
• Unique protein chains: 2
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Recombining binding protein suppressor of hairless	B [auth C]	422	Mus musculus	Mutation(s): 0  Gene Names: Rbpj, Igkjrb1, Igkrsbp, Rbpsuh
UniProt & NIH Common Fund Data Resources
Find proteins for P31266 (Mus musculus) Explore P31266  Go to UniProtKB:  P31266
IMPC:  MGI:96522

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
hRITA	C [auth R]	16	synthetic construct	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96K30 (Homo sapiens) Explore Q96K30  Go to UniProtKB:  Q96K30
PHAROS:  Q96K30 GTEx:  ENSG00000139405

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3')	A [auth B]	15	synthetic construct

Entity ID: 4
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3')	D [auth A]	15	synthetic construct

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BU1	AA [auth C], BA [auth C], CA [auth C], W [auth C], X [auth C], Y [auth C], Z [auth C]	1,4-BUTANEDIOL C4 H10 O2 WERYXYBDKMZEQL-UHFFFAOYSA-N
EDO	DA [auth R], E [auth C], F [auth C], G [auth C], H [auth C], I [auth C], J [auth C], K [auth C], L [auth C], M [auth C], N [auth C], O [auth C], P [auth C], Q [auth C], R [auth C], S [auth C], T [auth C], U [auth C], V [auth C]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free: 0.238 
• R-Value Work: 0.198 
• R-Value Observed: 0.200 
• Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.788	α = 90
b = 96.41	β = 90
c = 96.711	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data collection
HKL-2000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-04-26 
Deposition Author(s): Tabaja, N.H., Kovall, R.A.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	R01CA178974-02
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	T32CA117846-07

Revision History  

• Version 1.0: 2017-04-26
  Type: Initial release
  
• Version 1.1: 2017-09-20
  Changes: Author supporting evidence
• Version 1.2: 2019-12-04
  Changes: Author supporting evidence
• Version 1.3: 2024-03-06
  Changes: Data collection, Database references