5ADX

CryoEM structure of dynactin complex at 4.0 angstrom resolution


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.2 of the entry. See complete history


Literature

The Structure of the Dynactin Complex and its Interaction with Dynein.

Urnavicius, L.Zhang, K.Diamant, A.G.Motz, C.Schlager, M.A.Yu, M.Patel, N.A.Robinson, C.V.Carter, A.P.

(2015) Science 347: 1441

  • DOI: https://doi.org/10.1126/science.aaa4080
  • Primary Citation of Related Structures:  
    5ADX, 5AFR, 5AFU

  • PubMed Abstract: 

    Dynactin is an essential cofactor for the microtubule motor cytoplasmic dynein-1. We report the structure of the 23-subunit dynactin complex by cryo-electron microscopy to 4.0 angstroms. Our reconstruction reveals how dynactin is built around a filament containing eight copies of the actin-related protein Arp1 and one of β-actin. The filament is capped at each end by distinct protein complexes, and its length is defined by elongated peptides that emerge from the α-helical shoulder domain. A further 8.2 angstrom structure of the complex between dynein, dynactin, and the motility-inducing cargo adaptor Bicaudal-D2 shows how the translational symmetry of the dynein tail matches that of the dynactin filament. The Bicaudal-D2 coiled coil runs between dynein and dynactin to stabilize the mutually dependent interactions between all three components.


  • Organizational Affiliation

    Medical Research Council Laboratory of Molecular Biology, Division of Structural Studies, Francis Crick Avenue, Cambridge, CB2 0QH, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ACTIN RELATED PROTEIN 1
A, B, C, D, E
A, B, C, D, E, F, G, I
370Sus scrofaMutation(s): 0 
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UniProt GroupF2Z5G5
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ACTIN, CYTOPLASMIC 1370Sus scrofaMutation(s): 0 
UniProt
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UniProt GroupQ6QAQ1
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ACTIN RELATED PROTEIN 11417Sus scrofaMutation(s): 0 
UniProt
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UniProt GroupI3LHK5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
CAPPING PROTEIN (ACTIN FILAMENT) MUSCLE Z-LINE, ALPHA 1275Sus scrofaMutation(s): 0 
UniProt
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UniProt GroupA0PFK5
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
F-ACTIN CAPPING PROTEIN BETA SUBUNIT VARIANT II270Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2824Sus scrofaMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2818Sus scrofaMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 3
O, P
88Sus scrofaMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2
Q, R
91Sus scrofaMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN 5S [auth U]190Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 6T [auth V]165Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2U [auth Y]243Sus scrofaMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2AA [auth z],
V [auth Z]
419Sus scrofaMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2W [auth a]48Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2X [auth b]71Sus scrofaMutation(s): 0 
UniProt
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UniProt GroupA0A0J9X293
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2Y [auth c]31Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
DYNACTIN SUBUNIT 2Z [auth d]20Sus scrofaMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-12-30
    Type: Initial release
  • Version 1.1: 2017-04-19
    Changes: Other
  • Version 1.2: 2017-07-19
    Changes: Data collection