4ZKJ

Crystal structure of CRISPR-associated protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.183 

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Literature

Crystal Structure of Streptococcus pyogenes Cas1 and Its Interaction with Csn2 in the Type II CRISPR-Cas System

Ka, D.Lee, H.Jung, Y.D.Kim, K.Seok, C.Suh, N.Bae, E.

(2016) Structure 24: 70-79

  • DOI: https://doi.org/10.1016/j.str.2015.10.019
  • Primary Citation of Related Structures:  
    4ZKJ

  • PubMed Abstract: 

    CRISPRs and Cas proteins constitute an RNA-guided microbial immune system against invading nucleic acids. Cas1 is a universal Cas protein found in all three types of CRISPR-Cas systems, and its role is implicated in new spacer acquisition during CRISPR-mediated adaptive immunity. Here, we report the crystal structure of Streptococcus pyogenes Cas1 (SpCas1) in a type II CRISPR-Cas system and characterize its interaction with S. pyogenes Csn2 (SpCsn2). The SpCas1 structure reveals a unique conformational state distinct from type I Cas1 structures, resulting in a more extensive dimerization interface, a more globular overall structure, and a disruption of potential metal-binding sites for catalysis. We demonstrate that SpCas1 directly interacts with SpCsn2, and identify the binding interface and key residues for Cas complex formation. These results provide structural information for a type II Cas1 protein, and lay a foundation for studying multiprotein Cas complexes functioning in type II CRISPR-Cas systems.


  • Organizational Affiliation

    Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated protein Cas1
A, B
291Streptococcus pyogenes M1 476Mutation(s): 0 
Gene Names: cas1M1GAS476_0831
EC: 3.1
UniProt
Find proteins for J7M1H5 (Streptococcus pyogenes M1 476)
Explore J7M1H5 
Go to UniProtKB:  J7M1H5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupJ7M1H5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.183 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 95.205α = 90
b = 95.205β = 90
c = 210.843γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data scaling
PHENIXphasing
PHENIXmodel building
HKL-2000data reduction

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2016-01-13 
  • Deposition Author(s): Ka, D., Bae, E.

Funding OrganizationLocationGrant Number
Rural Development AdministrationKorea, Republic OfPJ009781
National Research FoundationKorea, Republic Of2013R1A1A2010018
Rural Development AdministrationKorea, Republic OfPJ01111201

Revision History  (Full details and data files)

  • Version 1.0: 2016-01-13
    Type: Initial release
  • Version 1.1: 2016-01-20
    Changes: Database references