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Crystal structure of CRISPR-associated protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.6/0.6M Na/KH2PO4, 27% (w/v) glycerol and 130 mM HEPES pH 7.0
Crystal Properties Matthews coefficient Solvent content 4.05 69.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.205 α = 90 b = 95.205 β = 90 c = 210.843 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2014-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 99.6 0.078 21.25 10.9 579853 579520
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 99.5 0.657 3.97 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 35.14 546373 1961 97.6 0.18295 0.18185 0.1905 0.21129 0.216 RANDOM 70.034
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.18 0.37 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.251 r_dihedral_angle_4_deg 18.823 r_dihedral_angle_3_deg 13.311 r_long_range_B_other 9.841 r_long_range_B_refined 9.834 r_scangle_other 8.144 r_dihedral_angle_1_deg 5.91 r_scbond_it 5.66 r_scbond_other 5.66 r_mcangle_other 5.342
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.251 r_dihedral_angle_4_deg 18.823 r_dihedral_angle_3_deg 13.311 r_long_range_B_other 9.841 r_long_range_B_refined 9.834 r_scangle_other 8.144 r_dihedral_angle_1_deg 5.91 r_scbond_it 5.66 r_scbond_other 5.66 r_mcangle_other 5.342 r_mcangle_it 5.341 r_mcbond_it 3.921 r_mcbond_other 3.9 r_angle_other_deg 2.429 r_angle_refined_deg 1.76 r_chiral_restr 0.109 r_bond_refined_d 0.019 r_gen_planes_other 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4657 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling PHENIX phasing PHENIX model building HKL-2000 data reduction