4XQ2

Ensemble refinement of cystathione gamma lyase (CalE6) D7G from Micromonospora echinospora


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.145 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The crystal structure of cystathione gamma lyase (CalE6) from Micromonospora echinospora

Yennamalli, R.M.Tan, K.Wang, F.Bigelow, L.Jedrzejczak, R.Babnigg, G.Bingman, C.A.Joachimiak, A.Kharel, M.K.Singh, S.Thorson, J.S.Phillips Jr., G.N.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CalE6
A, B, C, D, E
A, B, C, D, E, F, G, H
384Micromonospora echinosporaMutation(s): 1 
Gene Names: calE6
UniProt
Find proteins for Q8KNG3 (Micromonospora echinospora)
Explore Q8KNG3 
Go to UniProtKB:  Q8KNG3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8KNG3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MES
Query on MES

Download Ideal Coordinates CCD File 
CA [auth D]
CB [auth H]
I [auth A]
IA [auth E]
MA [auth F]
CA [auth D],
CB [auth H],
I [auth A],
IA [auth E],
MA [auth F],
O [auth B],
VA [auth G],
X [auth C]
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
DA [auth D]
DB [auth H]
EA [auth D]
EB [auth H]
FA [auth D]
DA [auth D],
DB [auth H],
EA [auth D],
EB [auth H],
FA [auth D],
J [auth A],
JA [auth E],
K [auth A],
KA [auth E],
L [auth A],
NA [auth F],
OA [auth F],
P [auth B],
PA [auth F],
Q [auth B],
QA [auth F],
R [auth B],
RA [auth F],
S [auth B],
SA [auth F],
T [auth B],
U [auth B],
V [auth B],
WA [auth G],
XA [auth G],
Y [auth C],
YA [auth G],
ZA [auth G]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
FMT
Query on FMT

Download Ideal Coordinates CCD File 
AB [auth G],
TA [auth F],
Z [auth C]
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth C]
BA [auth C]
BB [auth G]
FB [auth H]
GA [auth D]
AA [auth C],
BA [auth C],
BB [auth G],
FB [auth H],
GA [auth D],
GB [auth H],
HA [auth D],
LA [auth E],
M [auth A],
N [auth A],
UA [auth F],
W [auth B]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
LLP
Query on LLP
A, B, C, D, E
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC14 H22 N3 O7 PLYS
MSE
Query on MSE
A, B, C, D, E
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.145 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 146.855α = 90
b = 146.981β = 90
c = 349.905γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2015-04-15
    Type: Initial release