3WWS

Crystal structure of Serine/threonine-protein kinase 3

PDB DOI: https://doi.org/10.2210/pdb3WWS/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-06-27 Released: 2015-07-01
Deposition Author(s): Lee, S.J., Song, J., Yamashita, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.311
R-Value Work: 0.269
R-Value Observed: 0.271

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Serine/threonine-protein kinase 3

Lee, S.J., Song, J., Yamashita, E.

To be published.

Macromolecule Content

Total Structure Weight: 24.69 kDa
Atom Count: 1,681
Modelled Residue Count: 198
Deposited Residue Count: 198
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase 3	A	51	Homo sapiens	Mutation(s): 0 Gene Names: STK3, KRS1, MST2 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13188 (Homo sapiens) Explore Q13188 Go to UniProtKB: Q13188
PHAROS: Q13188 GTEx: ENSG00000104375
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q13188
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase 3	B [auth D], C, D [auth B]	49	Homo sapiens	Mutation(s): 0 Gene Names: STK3, KRS1, MST2 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13188 (Homo sapiens) Explore Q13188 Go to UniProtKB: Q13188
PHAROS: Q13188 GTEx: ENSG00000104375
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q13188
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.311
R-Value Work: 0.269
R-Value Observed: 0.271
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.831	α = 90
b = 32.678	β = 109.63
c = 55.83	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-07-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-07-01
Type: Initial release
Version 1.1: 2015-07-15
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.