3O8Y

Stable-5-Lipoxygenase

• PDB DOI: https://doi.org/10.2210/pdb3O8Y/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 
• Membrane Protein: Yes  OPMmpstruc


• Deposited: 2010-08-03 Released: 2011-01-19 
• Deposition Author(s): Newcomer, M.E., Gilbert, N.C., Bartlett, S.G., Waight, M.T., Neau, D.B., Boeglin, W.E., Brash, A.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.39 Å
• R-Value Free: 0.210 
• R-Value Work: 0.182 
• R-Value Observed: 0.183 

Literature

The structure of human 5-lipoxygenase.

Gilbert, N.C., Bartlett, S.G., Waight, M.T., Neau, D.B., Boeglin, W.E., Brash, A.R., Newcomer, M.E.

(2011) Science 331: 217-219

• PubMed: 21233389 
• DOI: https://doi.org/10.1126/science.1197203
• Primary Citation of Related Structures:  
  3O8Y


• PubMed Abstract: 
  

  The synthesis of both proinflammatory leukotrienes and anti-inflammatory lipoxins requires the enzyme 5-lipoxygenase (5-LOX). 5-LOX activity is short-lived, apparently in part because of an intrinsic instability of the enzyme. We identified a 5-LOX-specific destabilizing sequence that is involved in orienting the carboxyl terminus, which binds the catalytic iron. Here, we report the crystal structure at 2.4 angstrom resolution of human 5-LOX stabilized by replacement of this sequence.

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Organizational Affiliation: 

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 158.98 kDa 
• Atom Count: 11,611 
• Modelled Residue Count: 1,346 
• Deposited Residue Count: 1,382 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Arachidonate 5-lipoxygenase	A, B	691	Homo sapiens	Mutation(s): 9  Gene Names: ALOX5, LOG5 EC: 1.13.11.34 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P09917 (Homo sapiens) Explore P09917  Go to UniProtKB:  P09917
PHAROS:  P09917 GTEx:  ENSG00000012779

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE2	C [auth A], D [auth B]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.39 Å
• R-Value Free: 0.210 
• R-Value Work: 0.182 
• R-Value Observed: 0.183 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.17	α = 90
b = 202.89	β = 109.56
c = 76.8	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
PHENIX	refinement
xia2	data reduction
xia2	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-01-19 
Deposition Author(s): Newcomer, M.E., Gilbert, N.C., Bartlett, S.G., Waight, M.T., Neau, D.B., Boeglin, W.E., Brash, A.R.

Revision History  

• Version 1.0: 2011-01-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2021-10-06
  Changes: Database references, Derived calculations
• Version 1.3: 2024-02-21
  Changes: Data collection