Download MendeleyCrystal structure of Toxic Shock Syndrome Toxin 1 (TSST-1) in complex with the human T cell receptor beta chain Vbeta2.1 (EP-8)
Bonsor, D.A., Sundberg, E.J.To be published.
3MFG
Crystal structure of Toxic Shock Syndrome Toxin 1 (TSST-1) in complex with the human T cell receptor beta chain Vbeta2.1 (EP-8)
- PDB DOI: https://doi.org/10.2210/pdb3MFG/pdb
- Classification: TOXIN/IMMUNE SYSTEM
- Organism(s): Staphylococcus aureus subsp. aureus N315, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-04-02 Released: 2010-11-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.37 Å
- R-Value Free: 0.283
- R-Value Work: 0.234
- R-Value Observed: 0.237
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Toxic shock syndrome toxin-1 | 194 | Staphylococcus aureus subsp. aureus N315 | Mutation(s): 0 Gene Names: tst, SA1819 |  | |
UniProt | |||||
Find proteins for A0A0H3JMU6 (Staphylococcus aureus (strain N315)) Explore A0A0H3JMU6 Go to UniProtKB: A0A0H3JMU6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3JMU6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V_segment translation product | 118 | Homo sapiens | Mutation(s): 0 Gene Names: TCRBV2S1 |  | |
UniProt | |||||
Find proteins for A0A5B4 (Homo sapiens) Explore A0A5B4 Go to UniProtKB: A0A5B4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A5B4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth B], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.37 Å
- R-Value Free: 0.283
- R-Value Work: 0.234
- R-Value Observed: 0.237
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 242.62 | α = 90 |
| b = 242.62 | β = 90 |
| c = 47.14 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| Blu-Ice | data collection |
Entry History
Deposition Data
- Released Date: 2010-11-24 Deposition Author(s): Bonsor, D.A., Sundberg, E.J.
Revision History (Full details and data files)
- Version 1.0: 2010-11-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
