Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
Purpero, V.M., Valley, M.P., Ohlendorf, D.H., Lipscomb, J.D., Burk, D., Dolbeare, K.B., Brown, K.C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protocatechuate 3,4-dioxygenase alpha chain | 200 | Pseudomonas putida | Mutation(s): 0  Gene Names: pcaG EC: 1.13.11.3 | ||
UniProt | |||||
Find proteins for P00436 (Pseudomonas putida) Explore P00436  Go to UniProtKB:  P00436 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00436 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protocatechuate 3,4-dioxygenase beta chain | 238 | Pseudomonas putida | Mutation(s): 1  Gene Names: pcaH EC: 1.13.11.3 | ||
UniProt | |||||
Find proteins for P00437 (Pseudomonas putida) Explore P00437  Go to UniProtKB:  P00437 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00437 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TRS Query on TRS | AA [auth B], FB [auth E], NB [auth F], O [auth A], TA [auth D] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
SO4 Query on SO4 | EB [auth E] HA [auth C] M [auth A] MB [auth F] SA [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | IA [auth C], U [auth M] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
BME Query on BME | AB [auth P] BB [auth P] CB [auth P] DA [auth N] DB [auth P] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N | |||
FE Query on FE | BA [auth N] GB [auth Q] KA [auth O] OB [auth R] P [auth M] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
CL Query on CL | CA [auth N] HB [auth Q] LA [auth O] PB [auth R] Q [auth M] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 190.31 | α = 90 |
b = 168.04 | β = 132.3 |
c = 128.16 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |