3KAZ

Crystal structure of abscisic acid receptor PYL2

• PDB DOI: https://doi.org/10.2210/pdb3KAZ/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-10-19 Released: 2009-12-08 
• Deposition Author(s): Zhou, X.E., Melcher, K., Ng, L.-M., Soon, F.-F., Xu, Y., Suino-Powell, K.M., Kovach, A., Li, J., Xu, H.E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.250 
• R-Value Work: 0.211 
• R-Value Observed: 0.214 

Literature

Agate-latch-lock mechanism for hormone signalling by abscisic acid receptors

Melcher, K., Ng, L.-M., Zhou, X.E., Soon, F.-F., Xu, Y., Suino-Powell, K.-M., Park, S.-Y., Weiner, J.J., Fujii, H., Chinnusamy, V., Kovach, A., Li, J., Wang, Y., Li, J.Y., Peterson, F.C., Jensen, D.R., Yong, E.-L., Volkman, B.F., Cutler, S.R., Zhu, J.-K., Xu, H.E.

(2009) Nature 462: 602-608

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 59.82 kDa 
• Atom Count: 4,407 
• Modelled Residue Count: 526 
• Deposited Residue Count: 528 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein At2g26040	A, B, C	176	Arabidopsis thaliana	Mutation(s): 0  Gene Names: At2g26040
UniProt
Find proteins for O80992 (Arabidopsis thaliana) Explore O80992  Go to UniProtKB:  O80992

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BU2	D [auth A], E [auth B], F [auth C]	1,3-BUTANEDIOL C4 H10 O2 PUPZLCDOIYMWBV-BYPYZUCNSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.250 
• R-Value Work: 0.211 
• R-Value Observed: 0.214 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.187	α = 90
b = 104.907	β = 90
c = 185.409	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-12-08 
Deposition Author(s): Zhou, X.E., Melcher, K., Ng, L.-M., Soon, F.-F., Xu, Y., Suino-Powell, K.M., Kovach, A., Li, J., Xu, H.E.

Revision History  

• Version 1.0: 2009-12-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations