3J05

Three-dimensional structure of Dengue virus serotype 1 complexed with HMAb 14c10 Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structural basis for serotype-specific neutralization of dengue virus by a human antibody.

Teoh, E.P.Kukkaro, P.Teo, E.W.Lim, A.P.Tan, T.T.Yip, A.Schul, W.Aung, M.Kostyuchenko, V.A.Leo, Y.S.Chan, S.H.Smith, K.G.Chan, A.H.Zou, G.Ooi, E.E.Kemeny, D.M.Tan, G.K.Ng, J.K.Ng, M.L.Alonso, S.Fisher, D.Shi, P.Y.Hanson, B.J.Lok, S.M.Macary, P.A.

(2012) Sci Transl Med 4: 139ra83-139ra83

  • DOI: https://doi.org/10.1126/scitranslmed.3003888
  • Primary Citation of Related Structures:  
    3J05, 4CAU

  • PubMed Abstract: 

    Dengue virus (DENV) is a mosquito-borne flavivirus that affects 2.5 billion people worldwide. There are four dengue serotypes (DENV1 to DENV4), and infection with one elicits lifelong immunity to that serotype but offers only transient protection against the other serotypes. Identification of the protective determinants of the human antibody response to DENV is a vital requirement for the design and evaluation of future preventative therapies and treatments. Here, we describe the isolation of a neutralizing antibody from a DENV1-infected patient. The human antibody 14c10 (HM14c10) binds specifically to DENV1. HM14c10 neutralizes the virus principally by blocking virus attachment; at higher concentrations, a post-attachment step can also be inhibited. In vivo studies show that the HM14c10 antibody has antiviral activity at picomolar concentrations. A 7 Å resolution cryoelectron microscopy map of Fab fragments of HM14c10 in a complex with DENV1 shows targeting of a discontinuous epitope that spans the adjacent surface of envelope protein dimers. As found previously, a human antibody specific for the related West Nile virus binds to a similar quaternary structure, suggesting that this could be an immunodominant epitope. These findings provide a structural and molecular context for durable, serotype-specific immunity to DENV infection.


  • Organizational Affiliation

    Department of Microbiology and Life Sciences Institute Immunology Programme, National University of Singapore, Singapore 117597, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
envelope protein
A, B, C
400dengue virus type 1Mutation(s): 0 
UniProt
Find proteins for Q689G3 (dengue virus type 1)
Explore Q689G3 
Go to UniProtKB:  Q689G3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ689G3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONEMAN
RECONSTRUCTIONMPSA

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-07-04
    Type: Initial release
  • Version 1.1: 2018-07-18
    Changes: Data collection
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations, Refinement description