3H92

The crystal structure of one domain of the protein with unknown function from Methanocaldococcus jannaschii

PDB DOI: https://doi.org/10.2210/pdb3H92/pdb

Classification: structural genomics, unknown function
Organism(s): Methanocaldococcus jannaschii
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2009-04-29 Released: 2009-05-12
Deposition Author(s): Zhang, R., Hatzos, C., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.278
R-Value Work: 0.202
R-Value Observed: 0.206

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of one domain of the protein with unknown function from Methanocaldococcus jannaschii

Zhang, R., Hatzos, C., Moy, S., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 11.5 kDa
Atom Count: 781
Modelled Residue Count: 86
Deposited Residue Count: 92
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized ATP-binding protein MJECL15	A	92	Methanocaldococcus jannaschii	Mutation(s): 0 Gene Names: GI:1522655, MJECL15
UniProt
Find proteins for Q60277 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore Q60277 Go to UniProtKB: Q60277
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q60277
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PG6 Query on PG6 Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE C₁₂ H₂₆ O₆ DMDPGPKXQDIQQG-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.278
R-Value Work: 0.202
R-Value Observed: 0.206
Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.501	α = 90
b = 50.501	β = 90
c = 42.305	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-05-12

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2009-05-12
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.