Download MendeleyThe crystal structure of the putative N-acetylmuramoyl-L-alanine amidase from Neisseria meningitidis.
Zhang, R., Zhou, M., Bargassa, M., Joachimiak, A.To be published.
3CZX
The crystal structure of the putative N-acetylmuramoyl-L-alanine amidase from Neisseria meningitidis
- PDB DOI: https://doi.org/10.2210/pdb3CZX/pdb
- Classification: HYDROLASE
- Organism(s): Neisseria meningitidis MC58
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-04-30 Released: 2008-07-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.218
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative N-acetylmuramoyl-L-alanine amidase | 182 | Neisseria meningitidis MC58 | Mutation(s): 0 Gene Names: GI:7226323, NMB1085 |  | |
UniProt | |||||
Find proteins for Q9JZE9 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JZE9 Go to UniProtKB: Q9JZE9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9JZE9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | E [auth A], F [auth B], G [auth C], H [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.218
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.955 | α = 90 |
| b = 65.039 | β = 109.53 |
| c = 79.319 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-07-01 Deposition Author(s): Zhang, R., Zhou, M., Bargassa, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-07-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
