3BZ6

Crystal structure of a conserved protein of unknown function from Pseudomonas syringae pv. tomato str. DC3000

PDB DOI: https://doi.org/10.2210/pdb3BZ6/pdb
Entry: 3BZ6 supersedes: 2NR3

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Pseudomonas syringae pv. tomato str. DC3000
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2008-01-17 Released: 2008-02-05
Deposition Author(s): Tan, K., Duggan, E., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.241
R-Value Work: 0.196
R-Value Observed: 0.198

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of a conserved protein of unknown function from Pseudomonas syringae pv. tomato str. DC3000.

Tan, K., Duggan, E., Clancy, S., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 20.53 kDa
Atom Count: 1,342
Modelled Residue Count: 168
Deposited Residue Count: 183
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0502 protein PSPTO_2686	A	183	Pseudomonas syringae pv. tomato str. DC3000	Mutation(s): 0 Gene Names: PSPTO_2686
UniProt
Find proteins for Q882E2 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q882E2 Go to UniProtKB: Q882E2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q882E2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.241
R-Value Work: 0.196
R-Value Observed: 0.198
Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.025	α = 90
b = 72.025	β = 90
c = 73.119	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
SHELXD	phasing
MLPHARE	phasing
DM	phasing
RESOLVE	phasing
HKL-3000	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-02-05

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

This entry supersedes: 2NR3

Revision History (Full details and data files)

Version 1.0: 2008-02-05
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.