30XT | pdb_000030xt

Structre of ANDV spike in complex with EC1 domain of human PCDH1

• PDB DOI: https://doi.org/10.2210/pdb30XT/pdb
• EM Map EMD-58134: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Orthohantavirus andesense, Homo sapiens
• Expression System: Drosophila melanogaster
• Mutation(s): No 


• Deposited: 2026-05-17 Released: 2026-09-16 
• Deposition Author(s): Battini, L., Guardado-Calvo, P.
• Funding Organization(s): Agence Nationale de la Recherche (ANR), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.55 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental, in silico

Literature

Structre of ANDV spike in complex with EC1 domain of human PCDH1

Battini, L., Guardado-Calvo, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 9-mer - A4B4C1 Local Symmetry: Cyclic - C4  (Explore in 3D)
Local Stoichiometry: Hetero 8-mer - A4B4 

Local Symmetry: Cyclic - C4  (Explore in 3D)
Local Stoichiometry: Hetero 8-mer - A4B4 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 518.77 kDa 
• Atom Count: 28,749 
• Modeled Residue Count: 3,675 
• Deposited Residue Count: 4,682 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelopment polyprotein	A, C, E, G	517	Orthohantavirus andesense	Mutation(s): 0  Gene Names: GP
UniProt
Find proteins for Q9E006 (Andes orthohantavirus) Explore Q9E006  Go to UniProtKB:  Q9E006
Glycosylation
Glycosylation Sites: 3

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelopment polyprotein	B, D, F, H	532	Orthohantavirus andesense	Mutation(s): 0  Gene Names: GP
UniProt
Find proteins for Q9E006 (Andes orthohantavirus) Explore Q9E006  Go to UniProtKB:  Q9E006
Glycosylation
Glycosylation Sites: 1

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Protocadherin-1	I [auth Y]	486	Homo sapiens	Mutation(s): 0  Gene Names: PCDH1
UniProt & NIH Common Fund Data Resources
Find proteins for Q08174 (Homo sapiens) Explore Q08174  Go to UniProtKB:  Q08174
GTEx:  ENSG00000156453

Oligosaccharides

Help  

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	J [auth I], K [auth J], N [auth M], O [auth N], R [auth Q], S [auth R], V [auth U], W [auth V]	4		N-Glycosylation

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	L [auth K], M [auth L], P [auth O], Q [auth P], T [auth S], U [auth T], X [auth W], Y [auth X]	2		N-Glycosylation

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.55 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX	1.21.2
MODEL REFINEMENT	Coot	0.9.8.8

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-09-16 
Deposition Author(s): Battini, L., Guardado-Calvo, P.

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Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	--
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	1U19AI181977

Revision History  

• Version 1.0: 2026-09-16
  Type: Initial release