Download MendeleyCrystal structure of putative flavin reductase (YP_719437.1) from Haemophilus somnus 129PT at 1.06 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2R0X
Crystal structure of a putative flavin reductase (ycdh, hs_1225) from haemophilus somnus 129pt at 1.06 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2R0X/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Histophilus somni 129PT
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-08-21 Released: 2007-09-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.06 Å
- R-Value Free: 0.170
- R-Value Work: 0.141
- R-Value Observed: 0.143
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Possible flavin reductase | 158 | Histophilus somni 129PT | Mutation(s): 0 Gene Names: YP_719437.1, ycdH |  | |
UniProt | |||||
Find proteins for Q0I3S1 (Histophilus somni (strain 129Pt)) Explore Q0I3S1 Go to UniProtKB: Q0I3S1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0I3S1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | G [auth A], H [auth A], I [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | J [auth A], K [auth A], L [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.06 Å
- R-Value Free: 0.170
- R-Value Work: 0.141
- R-Value Observed: 0.143
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M32R0X
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.02 | α = 90 |
| b = 38.85 | β = 115.63 |
| c = 48.44 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-09-04 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-09-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
