2ONU

Plasmodium falciparum ubiquitin conjugating enzyme PF10_0330, putative homologue of human UBE2H

• PDB DOI: https://doi.org/10.2210/pdb2ONU/pdb

• Classification: LIGASE
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-01-24 Released: 2007-02-06 
• Deposition Author(s): Dong, A., Lew, J., Lin, L., Hassanali, A., Zhao, Y., Senisterra, G., Wasney, G., Vedadi, M., Kozieradzki, I., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Hui, R., Brokx, S.J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free: 0.250 
• R-Value Work: 0.213 
• R-Value Observed: 0.215 

Literature

Plasmodium falciparum ubiquitin conjugating enzyme PF10_0330, putative homologue of human UBE2H

Dong, A., Lew, J., Lin, L., Hassanali, A., Zhao, Y., Senisterra, G., Wasney, G., Vedadi, M., Kozieradzki, I., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Hui, R., Brokx, S.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 17.31 kDa 
• Atom Count: 1,318 
• Modelled Residue Count: 150 
• Deposited Residue Count: 152 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-conjugating enzyme, putative	A	152	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: PF10_0330 EC: 6.3.2.19
UniProt
Find proteins for Q8IJ70 (Plasmodium falciparum (isolate 3D7)) Explore Q8IJ70  Go to UniProtKB:  Q8IJ70

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PG4	B [auth A]	TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free: 0.250 
• R-Value Work: 0.213 
• R-Value Observed: 0.215 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.821	α = 90
b = 52.821	β = 90
c = 206.886	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-02-06 
Deposition Author(s): Dong, A., Lew, J., Lin, L., Hassanali, A., Zhao, Y., Senisterra, G., Wasney, G., Vedadi, M., Kozieradzki, I., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Hui, R., Brokx, S.J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2007-02-06
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description