2N62

ddFLN5+110


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1500 
  • Conformers Submitted: 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding.

Cabrita, L.D.Cassaignau, A.M.Launay, H.M.Waudby, C.A.Wlodarski, T.Camilloni, C.Karyadi, M.E.Robertson, A.L.Wang, X.Wentink, A.S.Goodsell, L.S.Woolhead, C.A.Vendruscolo, M.Dobson, C.M.Christodoulou, J.

(2016) Nat Struct Mol Biol 23: 278-285

  • DOI: https://doi.org/10.1038/nsmb.3182
  • Primary Citation of Related Structures:  
    2N62

  • PubMed Abstract: 

    Although detailed pictures of ribosome structures are emerging, little is known about the structural and cotranslational folding properties of nascent polypeptide chains at the atomic level. Here we used solution-state NMR spectroscopy to define a structural ensemble of a ribosome-nascent chain complex (RNC) formed during protein biosynthesis in Escherichia coli, in which a pair of immunoglobulin-like domains adopts a folded N-terminal domain (FLN5) and a disordered but compact C-terminal domain (FLN6). To study how FLN5 acquires its native structure cotranslationally, we progressively shortened the RNC constructs. We found that the ribosome modulates the folding process, because the complete sequence of FLN5 emerged well beyond the tunnel before acquiring native structure, whereas FLN5 in isolation folded spontaneously, even when truncated. This finding suggests that regulating structure acquisition during biosynthesis can reduce the probability of misfolding, particularly of homologous domains.


  • Organizational Affiliation

    institute of Structural and Molecular Biology, University College London.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
gelation factor, secretion monitor chimeraA [auth L]221Dictyostelium discoideumEscherichia coli
This entity is chimeric
Mutation(s): 0 
UniProt
Find proteins for P62395 (Escherichia coli (strain K12))
Explore P62395 
Go to UniProtKB:  P62395
Find proteins for P13466 (Dictyostelium discoideum)
Explore P13466 
Go to UniProtKB:  P13466
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP62395P13466
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1500 
  • Conformers Submitted: 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-02
    Type: Initial release
  • Version 1.1: 2016-03-23
    Changes: Database references
  • Version 1.2: 2016-04-20
    Changes: Database references