2MZ9

Solution structure of oxidized triheme cytochrome PpcA from Geobacter sulfurreducens


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Redox- and pH-linked conformational changes in triheme cytochrome PpcA from Geobacter sulfurreducens.

Morgado, L.Bruix, M.Pokkuluri, P.R.Salgueiro, C.A.Turner, D.L.

(2017) Biochem J 474: 231-246

  • DOI: https://doi.org/10.1042/BCJ20160932
  • Primary Citation of Related Structures:  
    2MZ9

  • PubMed Abstract: 

    The periplasmic triheme cytochrome PpcA from Geobacter sulfurreducens is highly abundant; it is the likely reservoir of electrons to the outer surface to assist the reduction of extracellular terminal acceptors; these include insoluble metal oxides in natural habitats and electrode surfaces from which electricity can be harvested. A detailed thermodynamic characterization of PpcA showed that it has an important redox-Bohr effect that might implicate the protein in e - /H + coupling mechanisms to sustain cellular growth. This functional mechanism requires control of both the redox state and the protonation state. In the present study, isotope-labeled PpcA was produced and the three-dimensional structure of PpcA in the oxidized form was determined by NMR. This is the first solution structure of a G. sulfurreducens cytochrome in the oxidized state. The comparison of oxidized and reduced structures revealed that the heme I axial ligand geometry changed and there were other significant changes in the segments near heme I. The pH-linked conformational rearrangements observed in the vicinity of the redox-Bohr center, both in the oxidized and reduced structures, constitute the structural basis for the differences observed in the pK a values of the redox-Bohr center, providing insights into the e - /H + coupling molecular mechanisms driven by PpcA in G. sulfurreducens.


  • Organizational Affiliation

    UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PpcA71Geobacter sulfurreducensMutation(s): 0 
Gene Names: ppcA
UniProt
Find proteins for Q8GGK7 (Geobacter sulfurreducens)
Explore Q8GGK7 
Go to UniProtKB:  Q8GGK7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8GGK7
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-02-10
    Type: Initial release
  • Version 1.1: 2017-03-15
    Changes: Database references