2MY3

Snu17p-Pml1p structure intermediate during RES complex assembly


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structures of intermediates during RES complex assembly.

Wysoczanski, P.Becker, S.Zweckstetter, M.

(2015) Sci Rep 5: 12545-12545

  • DOI: https://doi.org/10.1038/srep12545
  • Primary Citation of Related Structures:  
    2MY2, 2MY3

  • PubMed Abstract: 

    The action of the spliceosome depends on the stepwise cooperative assembly and disassembly of its components. Very strong cooperativity was observed for the RES (Retention and Splicing) hetero-trimeric complex where the affinity from binary to tertiary interactions changes more than 100-fold and affects RNA binding. The RES complex is involved in splicing regulation and retention of not properly spliced pre-mRNA with its three components--Snu17p, Pml1p and Bud13p--giving rise to the two possible intermediate dimeric complexes Pml1p-Snu17p and Bud13p-Snu17p. Here we determined the three-dimensional structure and dynamics of the Pml1p-Snu17p and Bud13p-Snu17p dimers using liquid state NMR. We demonstrate that localized as well as global changes occur along the RES trimer assembly pathway. The stepwise rigidification of the Snu17p structure following the binding of Pml1p and Bud13p provides a basis for the strong cooperative nature of RES complex assembly.


  • Organizational Affiliation

    Department for NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
U2 snRNP component IST3118Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: IST3SNU17YIB5WYIR005W
UniProt
Find proteins for P40565 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40565 
Go to UniProtKB:  P40565
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40565
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Pre-mRNA leakage protein 123Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: L1591PML1YLR016C
UniProt
Find proteins for Q07930 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q07930 
Go to UniProtKB:  Q07930
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07930
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-08-12
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other