2MY3 | pdb_00002my3

Snu17p-Pml1p structure intermediate during RES complex assembly

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
2	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
3	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
4	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
5	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
6	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
7	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
8	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
9	2D 1H-13C HSQC aliphatic	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
10	3D 1H-13C NOESY aromatic	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
11	3D 1H-13C NOESY aromatic	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
12	3D 1H-13C NOESY aliphatic	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
13	3D HNCO	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
14	3D HNCA	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
15	3D HNCA	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
16	3D HN(CO)CA	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
17	3D HN(CO)CA	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
18	3D HCCH-TOCSY	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
19	3D 1H-15N NOESY	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
20	3D 1H-15N NOESY	25 mM sodium phosphate, 250 mM sodium chloride, 1-1.2 mM Snu17p, 0.8-1 mM [U-13C; U-15N] Pml1p, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308
21	HBCBCGCDHD	25 mM sodium phosphate, 250 mM sodium chloride, 0.8-1 mM [U-13C; U-15N] Snu17p, 1.2-1.5 mM Pml1p_Fmoc, 1 mM sodium azide	90% H2O/10% D2O		6.8	ambient	308

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	900
2	Bruker	AVANCE	800
3	Bruker	AVANCE	700
4	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
2	refinment	X-PLOR NIH	2.34	Schwieters, Kuszewski, Tjandra and Clore
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	chemical shift assignment	Analysis_CCPN		CCPN
5	processing	TopSpin		Bruker Biospin
6	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich