Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrates and mutations of critical residues
Golan, G., Zharkov, D.O., Grollman, A.P., Shoham, G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Endonuclease VIII | E [auth A], F [auth B] | 262 | Escherichia coli | Mutation(s): 1  Gene Names: Nei EC: 3.2.2 (PDB Primary Data), 4.2.99.18 (PDB Primary Data) | |
UniProt | |||||
Find proteins for P50465 (Escherichia coli (strain K12)) Explore P50465  Go to UniProtKB:  P50465 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P50465 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3' | A [auth C], C [auth E] | 13 | N/A | ||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | B [auth D], D [auth F] | 13 | N/A | ||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | I [auth A], K [auth B], L [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | H [auth A], J [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
NA Query on NA | G [auth F], M [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 107.13 | α = 90 |
b = 107.13 | β = 90 |
c = 164.86 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
d*TREK | data reduction |
d*TREK | data scaling |
CNS | phasing |