2KOQ

NMR solution structures of 3-hydroxyoctanoyl-ACP from Streptomyces coelicolor Fatty Acid Synthase


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Recognition of intermediate functionality by acyl carrier protein over a complete cycle of fatty acid biosynthesis

Ploskon, E.Arthur, C.J.Kanari, A.L.Wattana-amorn, P.Williams, C.Crosby, J.Simpson, T.J.Willis, C.L.Crump, M.P.

(2010) Chem Biol 17: 776-785

  • DOI: https://doi.org/10.1016/j.chembiol.2010.05.024
  • Primary Citation of Related Structures:  
    2KOO, 2KOP, 2KOQ, 2KOR, 2KOS

  • PubMed Abstract: 

    It remains unclear whether in a bacterial fatty acid synthase (FAS) acyl chain transfer is a programmed or diffusion controlled and random action. Acyl carrier protein (ACP), which delivers all intermediates and interacts with all synthase enzymes, is the key player in this process. High-resolution structures of intermediates covalently bound to an ACP representing each step in fatty acid biosynthesis have been solved by solution NMR. These include hexanoyl-, 3-oxooctanyl-, 3R-hydroxyoctanoyl-, 2-octenoyl-, and octanoyl-ACP from Streptomyces coelicolor FAS. The high-resolution structures reveal that the ACP adopts a unique conformation for each intermediate driven by changes in the internal fatty acid binding pocket. The binding of each intermediate shows conserved structural features that may ensure effective molecular recognition over subsequent rounds of fatty acid biosynthesis.


  • Organizational Affiliation

    School of Chemistry, University of Bristol, Cantock's Close, Bristol BS81TS, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier protein81Streptomyces coelicolorMutation(s): 0 
Gene Names: acpPSCO2389SC4A7.17
UniProt
Find proteins for P72393 (Streptomyces coelicolor)
Explore P72393 
Go to UniProtKB:  P72393
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP72393
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SHW
Query on SHW

Download Ideal Coordinates CCD File 
B [auth A]S-[2-[3-[[(2S)-2-hydroxy-3,3-dimethyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3R)-3-hydroxyoctanethioate
C19 H37 N2 O9 P S
FOTLWMVULALMIY-RHSMWYFYSA-N
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-08-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Database references, Derived calculations