2GV1

NMR solution structure of the Acylphosphatase from Eschaerichia Coli


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 380 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

NMR solution structure of the acylphosphatase from Escherichia coli.

Pagano, K.Ramazzotti, M.Viglino, P.Esposito, G.Degl'innocenti, D.Taddei, N.Corazza, A.

(2006) J Biomol NMR 36: 199-204

  • DOI: https://doi.org/10.1007/s10858-006-9073-2
  • Primary Citation of Related Structures:  
    2GV1

  • PubMed Abstract: 

    The solution structure of Escherichia coli acylphosphatase (E. coli AcP), a small enzyme catalyzing the hydrolysis of acylphosphates, was determined by (1)H and (15)N NMR and restrained modelling calculation. In analogy with the other members of AcP family, E. coli AcP shows an alpha/beta sandwich domain composed of four antiparallel and one parallel beta-strand, assembled in a five-stranded beta-sheet facing two antiparallel alpha-helices. The pairwise RMSD values calculated for the backbone atoms of E. coli and Sulfolobus solfataricus AcP, Bovine common type AcP and Horse muscle AcP are 2.18, 5.31 and 5.12 A, respectively. No significant differences are present in the active site region and the catalytic residue side chains are consistently positioned in the structures.


  • Organizational Affiliation

    Department of Biomedical Sciences and Technologies, University of Udine, Udine, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable acylphosphatase92Escherichia coliMutation(s): 0 
Gene Names: yccX
EC: 3.6.1.7
UniProt
Find proteins for P0AB65 (Escherichia coli (strain K12))
Explore P0AB65 
Go to UniProtKB:  P0AB65
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AB65
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 380 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-10-31
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-09
    Changes: Data collection, Database references, Derived calculations