SDG

2-amino-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine-6-selenol

Created:	2007-12-07
Last modified:	2011-06-04

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2 entries where SDG is found in a polymer sequence

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Chemical Details
Formal Charge	0
Atom Count	37
Chiral Atom Count	3
Bond Count	39
Aromatic Bond Count	10

2D diagram of SDG

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Chemical Component Summary
Name	2-amino-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine-6-selenol
Systematic Name (OpenEye OEToolkits)	[(2R,3S,5R)-5-(2-amino-6-selanyl-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₁₀ H₁₄ N₅ O₆ P Se
Molecular Weight	410.182
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=P(O)(O)OCC3OC(n2cnc1c([SeH])nc(nc12)N)CC3O
SMILES	CACTVS	3.341	Nc1nc([SeH])c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2n1
SMILES	OpenEye OEToolkits	1.5.0	c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)nc(nc2[SeH])N
Canonical SMILES	CACTVS	3.341	Nc1nc([SeH])c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2n1
Canonical SMILES	OpenEye OEToolkits	1.5.0	c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)nc(nc2[SeH])N
InChI	InChI	1.03	InChI=1S/C10H14N5O6PSe/c11-10-13-8-7(9(23)14-10)12-3-15(8)6-1-4(16)5(21-6)2-20-22(17,18)19/h3-6,16H,1-2H2,(H2,17,18,19)(H3,11,13,14,23)/t4-,5+,6+/m0/s1
InChIKey	InChI	1.03	RNSTWFSCXYEWJZ-KVQBGUIXSA-N

Related Resource References

Resource Name	Reference
PubChem	137349989

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.