PRD_900079

heparin heptasaccharide

PRD_900079 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 1SR5.

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Chemical Component Summary
Name	heparin heptasaccharide
Identifiers	[(2R,3R,4S,5R,6R)-6-[(2S,3S,4S,5R,6R)-2-(dihydroxymethyl)-6-[(2R,3R,4S,5R,6R)-6-[(2R,3S,4S,5R,6R)-2-(dihydroxymethyl)-4 ,5-dimethoxy-6-[(2R,3R,4S,5S)-4-methoxy-5-sulfooxy-2-(sulfooxymethyl)oxan-3-yl]oxy-oxan-3-yl]oxy-4,5-disulfooxy-2-(sulfo oxymethyl)oxan-3-yl]oxy-4,5-dimethoxy-oxan-3-yl]oxy-3-[(2S,3R,4S,5R,6R)-5-[(3R,4S,6S)-3,4-dimethoxy-6-(methoxymethyl)oxa n-2-yl]oxy-3,4-dimethoxy-6-(methoxymethyl)oxan-2-yl]oxy-4,5-dimethoxy-oxan-2-yl]methyl hydrogen sulfate
Formula	C₅₅ H₉₈ O₅₄ S₆
Molecular Weight	1,815.724
Type	SACCHARIDE
Isomeric SMILES	COC[C@@H]1C[C@@H]([C@H](C(O1)O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2OC)OC)O[C@@H]3[C@H](O[C@@H]([C@@H]([C@H]3OC)OC)O[C@H]4[C @@H]([C@H]([C@@H](O[C@@H]4C(O)O)O[C@@H]5[C@H](O[C@@H]([C@@H]([C@H]5OS(=O)(=O)O)OS(=O)(=O)O)O[C@H]6[C@@H]([C@H]([C@@H](O[ C@H]6C(O)O)O[C@@H]7[C@H](OC[C@@H]([C@H]7OC)OS(=O)(=O)O)COS(=O)(=O)O)OC)OC)COS(=O)(=O)O)OC)OC)COS(=O)(=O)O)COC)OC)OC
InChI	InChI=1S/C55H98O54S6/c1-78-15-21-14-22(80-3)33(82-5)50(95-21)100-30-24(16-79-2)96-51(43(87-10)34(30)83-6)101-31-25(19-9 3-111(63,64)65)97-52(44(88-11)35(31)84-7)103-38-36(85-8)46(90-13)54(106-41(38)48(56)57)102-32-26(20-94-112(66,67)68)98-5 5(47(109-115(75,76)77)40(32)108-114(72,73)74)104-39-37(86-9)45(89-12)53(105-42(39)49(58)59)99-29-23(18-92-110(60,61)62)9 1-17-27(28(29)81-4)107-113(69,70)71/h21-59H,14-20H2,1-13H3,(H,60,61,62)(H,63,64,65)(H,66,67,68)(H,69,70,71)(H,72,73,74)( H,75,76,77)/t21-,22-,23+,24+,25+,26+,27-,28+,29+,30+,31+,32+,33+,34-,35-,36-,37-,38-,39-,40-,41-,42+,43+,44+,45+,46+,47+ ,50?,51-,52+,53+,54+,55+/m0/s1
InChIKey	QNKPWFIPDVKGET-ARQCQYMKSA-N
Composition	Polymer Sequences: YYB-U9J-GU6-U9M-U9G-GU8-U9D
BIRD class	ANTICOAGULANT
Represented As	BRANCHED
Compound Details	n/a
Description	n/a

Chemical Details
Formal Charge	0
Atom Count	213
Chiral Atom Count	32
Bond Count	219
Aromatic Bond Count	0

Related Resource References

Resource Name	Reference
PubChem	49867409

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.