NYN

(OC-6-23)-chlorido(ethane-1,2-diamine-kappa~2~N,N')(1,4,7-trithionane-kappa~3~S~1~,S~4~,S~7~)ruthenium

Created:	2020-01-10
Last modified:	2026-07-31

Find Related PDB Entry
2 entries where NYN is found as a standalone ligand

Find related ligands: Help
Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	35
Chiral Atom Count	0
Bond Count	38
Aromatic Bond Count	0

2D diagram of NYN

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	(OC-6-23)-chlorido(ethane-1,2-diamine-kappa~2~N,N')(1,4,7-trithionane-kappa~3~S~1~,S~4~,S~7~)ruthenium
Systematic Name (OpenEye OEToolkits)	10-chloranylspiro[1$l^{3},4$l^{3},7$l^{3}-trithia-10$l^{6}-ruthenatricyclo[5.2.1.0^{4,10}]decane-10,2'-1$l^{4},3$l^{4}-diaza-2$l^{6}-ruthenacyclopentane]
Formula	C₈ H₂₀ Cl N₂ Ru S₃
Molecular Weight	376.976
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	14.52	Cl[Ru]123([NH2]CC[NH2]1)S1CCS2CCS3CC1
SMILES	CACTVS	3.385	NCCN.Cl[Ru].C1CSCCSCCS1
SMILES	OpenEye OEToolkits	3.1.0.0	C1C[NH2][Ru]23([NH2]1)([S]4CC[S]2CC[S]3CC4)Cl
Canonical SMILES	CACTVS	3.385	NCCN.Cl[Ru].C1CSCCSCCS1
Canonical SMILES	OpenEye OEToolkits	3.1.0.0	C1C[NH2][Ru]23([NH2]1)([S]4CC[S]2CC[S]3CC4)Cl
InChI	InChI	1.06	InChI=1S/C6H12S3.C2H8N2.ClH.Ru/c1-2-8-5-6-9-4-3-7-1;3-1-2-4;;/h1-6H2;1-4H2;1H;/q;;;+1/p-1
InChIKey	InChI	1.06	DIWXAKQNVSJGAE-UHFFFAOYSA-M

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.