MDQ

2'-deoxy-3-(oxidomethyl)cytidine 5'-(dihydrogen phosphate)

Created:	2010-07-23
Last modified:	2011-06-04

Find Related PDB Entry
1 entries where MDQ is found in a polymer sequence

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	38
Chiral Atom Count	3
Bond Count	39
Aromatic Bond Count	0

2D diagram of MDQ

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	2'-deoxy-3-(oxidomethyl)cytidine 5'-(dihydrogen phosphate)
Systematic Name (OpenEye OEToolkits)	[6-azanyl-3-[(2R,4S,5R)-4-hydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2-oxo-pyrimidin-1-ium-1-yl]methanolate
Formula	C₁₀ H₁₆ N₃ O₈ P
Molecular Weight	337.223
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=P(O)(O)OCC2OC(N1C(=O)[N+](=C(N)C=C1)C[O-])CC2O
SMILES	CACTVS	3.370	NC1=[N+](C[O-])C(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
SMILES	OpenEye OEToolkits	1.7.0	C1C(C(OC1N2C=CC(=[N+](C2=O)C[O-])N)COP(=O)(O)O)O
Canonical SMILES	CACTVS	3.370	NC1=[N+](C[O-])C(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
Canonical SMILES	OpenEye OEToolkits	1.7.0	C1[C@@H]([C@H](O[C@H]1N2C=CC(=[N+](C2=O)C[O-])N)COP(=O)(O)O)O
InChI	InChI	1.03	InChI=1S/C10H15N3O8P/c11-8-1-2-12(10(16)13(8)5-14)9-3-6(15)7(21-9)4-20-22(17,18)19/h1-2,6-7,9,11,15H,3-5H2,(H2,17,18,19)/q-1/p+1/t6-,7+,9+/m0/s1
InChIKey	InChI	1.03	BDBXEKDYKCTPAE-LKEWCRSYSA-O

Related Resource References

Resource Name	Reference
PubChem	49867295

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.