EDV

1-(2-deoxy-2-methyl-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione

Created:	2014-02-12
Last modified:	2021-03-01

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1 entries where EDV is found as a standalone ligand

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Chemical Details
Formal Charge	0
Atom Count	33
Chiral Atom Count	4
Bond Count	34
Aromatic Bond Count	0

2D diagram of EDV

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Chemical Component Summary
Name	1-(2-deoxy-2-methyl-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione
Synonyms	(2'S)-2'-DEOXY-2'-METHYL-5-ETHYNYLURIDINE
Systematic Name (OpenEye OEToolkits)	5-ethynyl-1-[(2R,3S,4S,5R)-5-(hydroxymethyl)-3-methyl-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione
Formula	C₁₂ H₁₄ N₂ O₅
Molecular Weight	266.25
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=C1NC(=O)N(C=C1C#C)C2OC(C(O)C2C)CO
SMILES	CACTVS	3.385	C[CH]1[CH](O)[CH](CO)O[CH]1N2C=C(C#C)C(=O)NC2=O
SMILES	OpenEye OEToolkits	1.7.6	CC1C(C(OC1N2C=C(C(=O)NC2=O)C#C)CO)O
Canonical SMILES	CACTVS	3.385	C[C@H]1[C@H](O)[C@@H](CO)O[C@H]1N2C=C(C#C)C(=O)NC2=O
Canonical SMILES	OpenEye OEToolkits	1.7.6	C[C@H]1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C#C)CO)O
InChI	InChI	1.03	InChI=1S/C12H14N2O5/c1-3-7-4-14(12(18)13-10(7)17)11-6(2)9(16)8(5-15)19-11/h1,4,6,8-9,11,15-16H,5H2,2H3,(H,13,17,18)/t6-,8+,9-,11+/m0/s1
InChIKey	InChI	1.03	HBALXYGFMJGYHQ-GTQWGBSQSA-N

Related Resource References

Resource Name	Reference
PubChem	10515865

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.