EDU

2'-deoxy-5-ethynyluridine

Created:	2014-02-12
Last modified:	2014-08-13

Find Related PDB Entry
1 entries where EDU is found as a standalone ligand

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	30
Chiral Atom Count	3
Bond Count	31
Aromatic Bond Count	0

2D diagram of EDU

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	2'-deoxy-5-ethynyluridine
Systematic Name (OpenEye OEToolkits)	5-ethynyl-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione
Formula	C₁₁ H₁₂ N₂ O₅
Molecular Weight	252.223
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=C1NC(=O)N(C=C1C#C)C2OC(C(O)C2)CO
SMILES	CACTVS	3.385	OC[CH]1O[CH](C[CH]1O)N2C=C(C#C)C(=O)NC2=O
SMILES	OpenEye OEToolkits	1.7.6	C#CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)O
Canonical SMILES	CACTVS	3.385	OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(C#C)C(=O)NC2=O
Canonical SMILES	OpenEye OEToolkits	1.7.6	C#CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
InChI	InChI	1.03	InChI=1S/C11H12N2O5/c1-2-6-4-13(11(17)12-10(6)16)9-3-7(15)8(5-14)18-9/h1,4,7-9,14-15H,3,5H2,(H,12,16,17)/t7-,8+,9+/m0/s1
InChIKey	InChI	1.03	CDEURGJCGCHYFH-DJLDLDEBSA-N

Related Resource References

Resource Name	Reference
PubChem	472172
ChEMBL	CHEMBL222932
CCDC/CSD	ETYXUR

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.