EDC

N3,N4-ETHENO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE

Created:	1999-07-08
Last modified:	2020-06-05

Find Related PDB Entry
7 entries where EDC is found in a polymer sequence

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	36
Chiral Atom Count	3
Bond Count	38
Aromatic Bond Count	5

2D diagram of EDC

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	N3,N4-ETHENO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
Synonyms	6-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)imidazo[1,2-c]pyrimidin-5(6H)-one
Systematic Name (OpenEye OEToolkits)	[(2R,3S,5R)-3-oxidanyl-5-(5-oxidanylideneimidazo[1,2-c]pyrimidin-6-yl)oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₁₁ H₁₄ N₃ O₇ P
Molecular Weight	331.219
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=P(O)(O)OCC3OC(N2C(=O)n1c(ncc1)C=C2)CC3O
SMILES	CACTVS	3.370	O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=Cc3nccn3C2=O
SMILES	OpenEye OEToolkits	1.7.6	c1cn2c(n1)C=CN(C2=O)C3CC(C(O3)COP(=O)(O)O)O
Canonical SMILES	CACTVS	3.370	O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=Cc3nccn3C2=O
Canonical SMILES	OpenEye OEToolkits	1.7.6	c1cn2c(n1)C=CN(C2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI	InChI	1.03	InChI=1S/C11H14N3O7P/c15-7-5-10(21-8(7)6-20-22(17,18)19)14-3-1-9-12-2-4-13(9)11(14)16/h1-4,7-8,10,15H,5-6H2,(H2,17,18,19)/t7-,8+,10+/m0/s1
InChIKey	InChI	1.03	GFTHJCBXWZWVBW-QXFUBDJGSA-N

Related Resource References

Resource Name	Reference
PubChem	14860106

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.