D3Z

1-(5-deoxy-beta-L-xylofuranosyl)pyrimidine-2,4(1H,3H)-dione

Created:	2008-05-14
Last modified:	2011-06-04

Find Related PDB Entry
1 entries where D3Z is found as a standalone ligand

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	28
Chiral Atom Count	4
Bond Count	29
Aromatic Bond Count	0

2D diagram of D3Z

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	1-(5-deoxy-beta-L-xylofuranosyl)pyrimidine-2,4(1H,3H)-dione
Systematic Name (OpenEye OEToolkits)	1-[(2S,3S,4S,5S)-3,4-dihydroxy-5-methyl-oxolan-2-yl]pyrimidine-2,4-dione
Formula	C₉ H₁₂ N₂ O₅
Molecular Weight	228.202
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)C
SMILES	CACTVS	3.341	C[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O
SMILES	OpenEye OEToolkits	1.5.0	CC1C(C(C(O1)N2C=CC(=O)NC2=O)O)O
Canonical SMILES	CACTVS	3.341	C[C@@H]1O[C@@H]([C@@H](O)[C@@H]1O)N2C=CC(=O)NC2=O
Canonical SMILES	OpenEye OEToolkits	1.5.0	C[C@H]1[C@H]([C@@H]([C@H](O1)N2C=CC(=O)NC2=O)O)O
InChI	InChI	1.03	InChI=1S/C9H12N2O5/c1-4-6(13)7(14)8(16-4)11-3-2-5(12)10-9(11)15/h2-4,6-8,13-14H,1H3,(H,10,12,15)/t4-,6+,7-,8-/m0/s1
InChIKey	InChI	1.03	WUBAOANSQGKRHF-UCVXFZOQSA-N

Related Resource References

Resource Name	Reference
PubChem	42601395

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.